RetrogeneDB ID: | retro_ttru_734 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_3200:411255..411765(+) | ||
Located in intron of: | ENSTTRG00000001309 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSTTRG00000006164 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 68.57 % |
Parental protein coverage: | 86. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | PRPSTGPHKLRECLPLI-IFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDI-TYPAGFMDVISIDKTG |
P.PS..PHKL.ECLPLI..FLRNRLKY.LTG.EVKK.CMQ.F.K.DGKV.TD..T...GF..V.SI.KTG | |
Retrocopy | PHPSGDPHKLKECLPLI<LFLRNRLKYSLTGKEVKKTCMQQFLKVDGKVPTDR<TSSTGFKEVSSIGKTG |
Parental | ENFRLIYDT-KGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLE |
ENF.LI.DT.KG.F.VHR..PEE......K.RKIFVG.KGIPHLV.HDARTI..P.P..KVNDTI..DLE | |
Retrocopy | ENFYLICDT<KGYFVVHRMIPEEPSTTCTKLRKIFVGAKGIPHLVIHDARTIHHPIPF-KVNDTI*TDLE |
Parental | TGKITDFIKFDTGNLCMVTGGANLGRIGVITNRER |
.GK.TDF.KFDTGNL.MV..GA.LGRIGVI..R.R | |
Retrocopy | SGKMTDFNKFDTGNLYMVIRGATLGRIGVIASRKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000014601 | 1 retrocopy | |
Ailuropoda melanoleuca | ENSAMEG00000005805 | 14 retrocopies | |
Cavia porcellus | ENSCPOG00000006337 | 3 retrocopies | |
Equus caballus | ENSECAG00000010852 | 6 retrocopies | |
Homo sapiens | ENSG00000129824 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000023079 | 18 retrocopies | |
Meleagris gallopavo | ENSMGAG00000009671 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000011070 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005294 | 11 retrocopies | |
Otolemur garnettii | ENSOGAG00000011808 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000022470 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000003201 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000006164 | 13 retrocopies |