RetrogeneDB ID: | retro_ttru_746 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_3250:291044..291666(-) | ||
Located in intron of: | ENSTTRG00000008930 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YBX1 | ||
Ensembl ID: | ENSTTRG00000001353 | ||
Aliases: | None | ||
Description: | Y box binding protein 1 [Source:HGNC Symbol;Acc:8014] |
Percent Identity: | 69.16 % |
Parental protein coverage: | 65.82 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | EKGAEAANVTGPG-GV-PVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNSESGEKNEGSESAPEGQAQQ |
EK...AA.V.GPG.GV.P.QG...A..RNH..R..R.RGPP.N.QQNY..SE.GEK.EG.ESAPEG.A.Q | |
Retrocopy | EKRVRAADVAGPG<GV<PAQGGTRAPARNHHSRSSRHRGPPCNLQQNYRDSERGEKTEGFESAPEGRARQ |
Parental | RRPYRRRRFPPYYMRRPYGRRPQYS-NPPVQGEVMEGADNQGAGEQGRPVRQNMYRGYRPRFRRG-PPRQ |
.RPYRRRR.PPY..RRPYGR.PQ.S...PV.GEVMEGADNQGAGEQ.RPVRQNMYRGYRP.FRRG.P... | |
Retrocopy | QRPYRRRRRPPYCVRRPYGRQPQRS<HRPVRGEVMEGADNQGAGEQDRPVRQNMYRGYRPPFRRGPPRQR |
Parental | RQPREDGNEEDK-ENQGDETQGQQPPQRRYRRNFNYRRRRPENPKP-QDGKETKAADPPAENSSAPEAEQ |
........E.........ETQGQQPPQ.RYRRNF.YRRRRPENPKP.QDG.ET.AADPPAEN.SAPEAEQ | |
Retrocopy | QRREDGSEEDKE<KSRR*ETQGQQPPQCRYRRNFSYRRRRPENPKP<QDGEETQAADPPAENASAPEAEQ |
Parental | GGAE |
GGAE | |
Retrocopy | GGAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |