>retro_ttru_749
GTGATGAATGGTGCTATCCTTCAGCAAGTGTTTGTGGCGGATTATGTTGTTCAGGCCCGGATGTGTGGAGACTGCCACAG
AGTGGAAGCTGAGGATTTCTGGAAGGCTGTGGTGCAAGTCAGGCAAACGACTTTGCACAAAAGAACTTTCTACTGTCTAG
AACAGCTGATTTTGAAATGTGGCATGCACCGGAATACACTTCGTATCAAAGAGATTCATGATGGGCTGGATTTCTATTAT
TCCTCAAAACAACATGCTCAGAAGATGGTAGAATTTCTTCAGTGTACTGTTCCCACTAGATACAAAGCCTCACAGGGACT
GATCTCTCAGGATATCCATAGTAACACATACAATTACAAAAGCACCTTTTCTGTGGAAATTGTTCCAATATGCAAGGATA
ATGTTGTTTGTCTGTCTGCAAGACTGGCACAAATCCTGGGAAACATGAACCAGATTTGTGTGTGTATTCGAGTAACCAGC
GTCATCCATCTCATAGATCCAAATACCCTACAAGTTGCAGATATTGATGGGAGCGCTTTCTGGAGTCACCCTTTCAATAG
TTTATGCCACATCCCAAACAGCTAGAGGAGTTTATTGTTATGGAATGCAGCATAGTCCGAGATCTAAAACGCAGTGCAGG
TGCTGGAATGGTATCATAAAAGCATACCCTCGGGGAAGTCTGGGTACAGAAAACATCTGAAATGAGTACAGATAAACAGT
ATTTTTGTCGTACTCATTTGGGACATCTTCTGAATCCTGGAGACCTGGTGTTGGGGTTTGATCTGGCCAACTGTAACTTA
AATGATGAGCATATCAACAAAATGAAATCAGATAGAGTCCTAGATGTGGTGCTAGTCAAGAAGAGCTATGACCGTACCAA
ACGTCAGTGTCTTAGAAACCGGAAACTGAAAGAGCTTGCAAGAGATAGAGAAAACATGGATACAGATGATGAAAGGCAAT
ACCCAGATTTCCTTGAAGATCTGGAAGAAGATGAGGCAATTAGAAAAAGTGTGAATATTTATAGAGATTCAACGATTCCT
GTGGAAAGTGACACAGATGATGAAGGAGCACCTCGAATTAGTCTGGCTGAGATGCTTGAAGACCTTCACATTTCCCCAAG
ATGCTACTGGTGAAGAAGGTGAATCGATGATGACC
ORF - retro_ttru_749 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
89.92 % |
Parental protein coverage: |
76.34 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | VMNGAILQQVFVVDYVVQPQMCGDCHRVEAKDFWKAVVQVRQKTLHKKTFYYLEQLILKYGMYQNTLRIK |
| VMNGAILQQVFV.DYVVQ..MCGDCHRVEA.DFWKAVVQVRQ.TLHK.TFY.LEQLILK.GM..NTLRIK |
Retrocopy | VMNGAILQQVFVADYVVQARMCGDCHRVEAEDFWKAVVQVRQTTLHKRTFYCLEQLILKCGMHRNTLRIK |
|
Parental | DIHDGLDFYYSSKQHAQKMVEFLQCTVPTRYKASQRLISQDVHSNTYNYKSTFSVEIVPICKDNVVCLSP |
| .IHDGLDFYYSSKQHAQKMVEFLQCTVPTRYKASQ.LISQD.HSNTYNYKSTFSVEIVPICKDNVVCLS. |
Retrocopy | EIHDGLDFYYSSKQHAQKMVEFLQCTVPTRYKASQGLISQDIHSNTYNYKSTFSVEIVPICKDNVVCLSA |
|
Parental | KLAQSLGNMNQICVCIRVTSVIHLIDPNTLQVADIDGNTFWSH-PFN-SLCHPKQLEEFIVLECSIVRDL |
| .LAQ.LGNMNQICVCIRVTSVIHLIDPNTLQVADIDG..FWSH.PF.....HPKQLEEFIV.ECSIVRDL |
Retrocopy | RLAQILGNMNQICVCIRVTSVIHLIDPNTLQVADIDGSAFWSH<PFQ*FMPHPKQLEEFIVMECSIVRDL |
|
Parental | KRNAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNPGDLVLGFDLANCNLNDEHVNKMKSDR |
| KR.AGAGM.S.KHTLGEVWVQKTSEM.TDKQYFCRTHLGHLLNPGDLVLGFDLANCNLNDEH.NKMKSDR |
Retrocopy | KRSAGAGMVS*KHTLGEVWVQKTSEMSTDKQYFCRTHLGHLLNPGDLVLGFDLANCNLNDEHINKMKSDR |
|
Parental | VPDVVLIKKSYDRTKRQRRRNWKLKELARDRENMDTDDERQYQDFLEDLEEDEAIRKNVNIYRDSTIPVE |
| V.DVVL.KKSYDRTKRQ..RN.KLKELARDRENMDTDDERQY.DFLEDLEEDEAIRK.VNIYRDSTIPVE |
Retrocopy | VLDVVLVKKSYDRTKRQCLRNRKLKELARDRENMDTDDERQYPDFLEDLEEDEAIRKSVNIYRDSTIPVE |
|
Parental | GDTDDEGAPRISLAEMLEDLHIS-QDATGEEGESMMT |
| .DTDDEGAPRISLAEMLEDLHIS.QDATGEEGESMMT |
Retrocopy | SDTDDEGAPRISLAEMLEDLHIS>QDATGEEGESMMT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_749 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_749 was not experimentally validated.
Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.