RetrogeneDB ID:

retro_ttru_766

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_3338:535656..535965(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ZMAT2
Ensembl ID:ENSTTRG00000001777
Aliases:None
Description:zinc finger, matrin-type 2 [Source:HGNC Symbol;Acc:26433]


Retrocopy-Parental alignment summary:






>retro_ttru_766
ATGGCATCGGGCAGTGGGACAAAAAACTTGGACTTTCGCCGAAAGTGGGACAAAGATGAATATGAGAAGCTCGCCGAGAA
GAAGCTCACGAAAGAGAGAGAAAAGAAGGATGGAAAACCAGTGCAGCCAGTCACGCAAGAGCTTCTCCAGCATCGGGACT
CCAAGGTGGACCTGGAATCCAAACTTGGGAAGACAATCGTCATTACCAAGACCACCCCACAGTCTGAGATGGGAGGATAC
TATTGCAATGTCTGTGACTGTGTGGTGAAAGACTCCATCAACTTCCTGGATCACAGTAATGGAAAGAAA

ORF - retro_ttru_766 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 93.2 %
Parental protein coverage: 51.76 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMASGSGTKNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQPVKRELLRHRDYKVDLESKLGKTIVITK
MASGSGTKNLDFRRKWDKDEYEKLAEK.LT.EREKKDGKPVQPV..ELL.HRD.KVDLESKLGKTIVITK
RetrocopyMASGSGTKNLDFRRKWDKDEYEKLAEKKLTKEREKKDGKPVQPVTQELLQHRDSKVDLESKLGKTIVITK
ParentalTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKK
TTPQSEMGGYYCNVCDCVVKDSINFLDH.NGKK
RetrocopyTTPQSEMGGYYCNVCDCVVKDSINFLDHSNGKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_766 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_766 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 9 parental genes, and 23 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000059071 retrocopy
Callithrix jacchus ENSCJAG000000162313 retrocopies
Dipodomys ordii ENSDORG000000145598 retrocopies
Echinops telfairi ENSETEG000000054062 retrocopies
Ficedula albicollis ENSFALG000000089881 retrocopy
Myotis lucifugus ENSMLUG000000175252 retrocopies
Monodelphis domestica ENSMODG000000112691 retrocopy
Pteropus vampyrus ENSPVAG000000097171 retrocopy
Tursiops truncatus ENSTTRG00000001777 4 retrocopies



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