RetrogeneDB ID: retro_ttru_775

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_3383:287110..288071(-)
• Located in intron of: ENSTTRG00000005379

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PTGIS
• Ensembl ID: ENSTTRG00000004297
• Aliases: None
• Description: prostaglandin I2 (prostacyclin) synthase [Source:HGNC Symbol;Acc:9603]

Sequence

>retro_ttru_775
CGACCTGGAGAGCCTCCGCCGGAGGGCAGTATCCCCTGGTTGGGCTATGCTTTGGAGTTTGGAAAAGATGCTGCCAGCTT
CCTCACTAGGATGAAGGAGAAGCACGGTGATATCTTTACTGTGCTGGTGGGGGGCAGGTATGCCACCGTCCTCCTGGACC
CACACTCCTATGACATGGTGGTGTGGGAGCCTCGCACCAGGCTGGACTTCCACGCCTACGCCGTCTTCCTCATGGAGAGG
ATTTTTGACGCGCAGCTTCCGCATTACAGCCCCAGCGATGAAAAGTCCAAGATGAAACCGACTCTCCTCCACAAAGAACT
CCAGGCGCGCACGGAAGCCGTGTATGCCAACCTCCACACTGCCCCGCTGGGTGACACCAGGGAAGCAGGCAGTGGCTGGC
ATGCGACGGGACTCCTCGAATTCTCCTACAGCTGCCCGCTCGGAGCCGCTACCTGACTCTGCACGGTGTCGAGGCAGCGC
CCCACACCCGGGAGAGCCAGGCCCAGGACGGCATCCACTCAGCCGACGGCTTCCACGCCTTCCGCCAGCTCGACCTGCTG
CTCCCCAAACTGGCACGTGGCTCCCTGTCACTGGGGGATAGGGAGCAGGTGTGCAGGGTCAAAGGCCGCCTGTGGAAGCT
GCCGTCCCCAGCCAGGCCGGCCACTCGGGCCCACCGGAGCAAATGGCTGGAGAGTTACCTGCTGCACCTGGAGGAGGCGG
GTGTGTCGGAGCAGATGCAGGCGCGGGCTCCGGCGCTGCAGCTCTGGGCCACGCAGGGGAGCATGGGTCCCGCTGCCTCT
GGCCCCTGCTCTTCCTCAAGAATCCCGAGGCCCTGGCTGCTGTCCGTGGAGAGCTGGAGCCTATTCTCTTGCGAGTAGAG
CAGCCCATTTCGCAGATGACCACCCTCCCACGGAAGGTTTTGGACAGCGTGCCTGTGCTGGACAGCGTGCTGAGGGCCTC
A

Alignment

ORF - retro_ttru_775 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.92 %
• Parental protein coverage: 68. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  RPGEPPLDLGSIPWLGYALEFGKDAASFLTRMKEKHGDIFTVLVGGRYVTVLLDPHSYDMVVWEPRTRLD
          RPGEPP...GSIPWLGYALEFGKDAASFLTRMKEKHGDIFTVLVGGRY.TVLLDPHSYDMVVWEPRTRLD
Retrocopy RPGEPPPE-GSIPWLGYALEFGKDAASFLTRMKEKHGDIFTVLVGGRYATVLLDPHSYDMVVWEPRTRLD

Parental  FHAYAVFLMERIFDVQLPHYSPSDEKSKMKPTLLHKELQALTEAMYTNLHTVLLGDTMEAGSGWHEMGLL
          FHAYAVFLMERIFD.QLPHYSPSDEKSKMKPTLLHKELQA.TEA.Y.NLHT..LGDT.EAGSGWH..GLL
Retrocopy FHAYAVFLMERIFDAQLPHYSPSDEKSKMKPTLLHKELQARTEAVYANLHTAPLGDTREAGSGWHATGLL

Parental  EFSYSFLL-RAGYLTLYGVEAPPHTQESQAQDRVHSADVFHTFRQLDLLLPKLARGSLSVGDKNQVCRVK
          EFSYS..L.R..YLTL.GVEA.PHT.ESQAQD..HSAD.FH.FRQLDLLLPKLARGSLS.GD..QVCRVK
Retrocopy EFSYSCPL<RSRYLTLHGVEAAPHTRESQAQDGIHSADGFHAFRQLDLLLPKLARGSLSLGDREQVCRVK

Parental  GRLWKLLSPARLATRAHRSKWLESYLLHLEEMGVSEEMQARALVLQLWATQGNMGPAA-FWVLLFLLRTP
          GRLWKL.SPAR.ATRAHRSKWLESYLLHLEE.GVSE.MQARA..LQLWATQG.MGPAA..W.LLF.L..P
Retrocopy GRLWKLPSPARPATRAHRSKWLESYLLHLEEAGVSEQMQARAPALQLWATQGSMGPAA<LWPLLF-LKNP

Parental  EALAAVRGELEPMLLQAEQPISQMTALPQKVLDSMPVLDSVLSES
          EALAAVRGELEP.LL..EQPISQMT.LP.KVLDS.PVLDSVL..S
Retrocopy EALAAVRGELEPILLRVEQPISQMTTLPRKVLDSVPVLDSVLRAS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_775 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_775 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Ictidomys tridecemlineatus	ENSSTOG00000019624	1 retrocopy	retro_itri_185,
Tursiops truncatus	ENSTTRG00000004297	1 retrocopy	retro_ttru_775 ,