RetrogeneDB ID:

retro_ttru_792

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_3461:72277..72891(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RAN
Ensembl ID:ENSTTRG00000012732
Aliases:None
Description:RAN, member RAS oncogene family [Source:HGNC Symbol;Acc:9846]


Retrocopy-Parental alignment summary:






>retro_ttru_792
CAAGTATACATCTACGTGTACCTTAAAAATAATTACCTAATTGGTAAAACTACATTTGTGAAACATCATCTGACTGGTGA
ATTTGAGAAGTATGTAGCTACCTTGGGTGTTGAGGTCCATCCCCTTGTATTCCATACCAACAGAGGACCTATTAAGTTCA
ATGTATGGGATACAGCTGGTCAGGAGAAACTTGGTGGACTGAGAAATGGCTATTATATCCAAGCTCTGTGCCATTATGAT
GTTTGATGTAATATCGAGAGTTACAAGAACGTGCGTAACTGGCATACAGATCTGGTACGAGTGTGTGAGAACATCCCCAT
CGTGTTGTGTGGCAACAAAGTGGATATTAAGGACAGAAAGGTTAAGGCAAAGTCAACTGTCTTCAGCCGAAAGAAGAATC
TTCAGTACTATGACATTTCTGCCAAAAGTAACTACAACTTTGAAAAGCCCTTCTCTGGCTTGCTAGAAAACTGATCGGAG
ACCCTAACTTGGAGTTCGTCGCCATGCCTGCTCTCGCCCCACCAGAGGTGGTCATGGATCCAGCGTTGGCAGCGCAGTAC
GAGCACGATCTAGAGGTTGCTCAGACAACTGCCCTCCCGGATGAACATGATGAC

ORF - retro_ttru_792 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.81 %
Parental protein coverage: 90.04 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRD
QV.....L......GKTTFVK.HLTGEFEK.YVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK.GGLR.
RetrocopyQVYIYVYLKNNYLIGKTTFVKHHLTGEFEK-YVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKLGGLRN
ParentalGYYIQAQCAIIMFDVTSRV-TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQY
GYYIQ...A....DV......YKNV.NWH.DLVRVCENIPIVLCGNKVDIKDRKVKAKS.VF.RKKNLQY
RetrocopyGYYIQ---ALCHYDV*CNIESYKNVRNWHTDLVRVCENIPIVLCGNKVDIKDRKVKAKSTVFSRKKNLQY
ParentalYDISAKSNYNFEKPF-LWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD
YDISAKSNYNFEKPF.LWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDE.DD
RetrocopyYDISAKSNYNFEKPF<LWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEHDD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_792 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_792 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 20 parental genes, and 90 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000042224 retrocopies
Callithrix jacchus ENSCJAG000000039278 retrocopies
Echinops telfairi ENSETEG0000001187518 retrocopies
Homo sapiens ENSG000001323413 retrocopies
Gorilla gorilla ENSGGOG000000153404 retrocopies
Loxodonta africana ENSLAFG000000176731 retrocopy
Macaca mulatta ENSMMUG000000209272 retrocopies
Monodelphis domestica ENSMODG000000156018 retrocopies
Mus musculus ENSMUSG000000294304 retrocopies
Nomascus leucogenys ENSNLEG000000082824 retrocopies
Ornithorhynchus anatinus ENSOANG000000064471 retrocopy
Oryctolagus cuniculus ENSOCUG000000265062 retrocopies
Otolemur garnettii ENSOGAG000000250468 retrocopies
Pongo abelii ENSPPYG000000051243 retrocopies
Pan troglodytes ENSPTRG000000056364 retrocopies
Rattus norvegicus ENSRNOG000000009383 retrocopies
Sarcophilus harrisii ENSSHAG000000180181 retrocopy
Sus scrofa ENSSSCG000000097463 retrocopies
Tursiops truncatus ENSTTRG00000012732 6 retrocopies
Vicugna pacos ENSVPAG000000088803 retrocopies



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