RetrogeneDB ID: | retro_ttru_793 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_3463:156083..156989(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GALNT13 | ||
Ensembl ID: | ENSTTRG00000002506 | ||
Aliases: | None | ||
Description: | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13) [Source:HGNC Symbol;Acc:23242] |
Percent Identity: | 84.77 % |
Parental protein coverage: | 54.14 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | TYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRNYFEEIGTYDAGMDIWGGENLEMS |
TYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDR.YF.EIGTYDAGMDIWGGENLE.S | |
Retrocopy | TYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEIS |
Parental | FRIWQCGGSLEIVTCSHVGHVFRKATPYTFPGGTGHVINKNNRRLAEVWMDEFKDFFYIISPGVVKVDYG |
FRIWQCGG.LEIVTCSHVGHVFRKATPYTFPGGTG..INKNNRRLAE.W.DEFK.FFYIIS.GV.KVDYG | |
Retrocopy | FRIWQCGGTLEIVTCSHVGHVFRKATPYTFPGGTGQIINKNNRRLAEGWLDEFKNFFYIISQGVTKVDYG |
Parental | DVSVRRTLRENLKCKPFSWYLENIYPDSQIPRRYYSLGEIRNVETNQCLDNMGRKENEKVGIFNCHGMGG |
D.S.R..LR..L.C.PFSWYLENIYPDSQIPR.Y.SLGEIRNVETNQCLDNM.RKENEKVGIF.CHGMGG | |
Retrocopy | DISSRLGLRHKLQCRPFSWYLENIYPDSQIPRHYFSLGEIRNVETNQCLDNMARKENEKVGIFSCHGMGG |
Parental | NQVFSYTADKEIRTDDLCLDVSRLNGPVIMLKCHHMRGNQLWEYDAERLTLRHVNSNQCLDEPSEEDKMV |
NQVFSYTA.KEIRTDDLCLDVS.LNGPV.ML.CHH..GNQLWEYD...LTL.HVNSNQCL....EED..V | |
Retrocopy | NQVFSYTANKEIRTDDLCLDVSKLNGPVTMLTCHHLKGNQLWEYDPVKLTLQHVNSNQCLEKATEEDSQV |
Parental | PTMQDCSGSRS-QQWLLRNMTL |
P...DC.GSRS.QQWLL.N.TL | |
Retrocopy | PSIRDCNGSRSQQQWLL*NVTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Microcebus murinus | ENSMICG00000013917 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017645 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016208 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000000869 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000002506 | 2 retrocopies |
retro_ttru_793 , retro_ttru_854,
|
Tursiops truncatus | ENSTTRG00000010848 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000017058 | 1 retrocopy |