RetrogeneDB ID:

retro_ttru_801

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_3486:423163..423774(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTTRG00000012897
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ttru_801
ATGACAACAAATGAAAGTATCAGCATCTTTAGTTCAGCATCCCTGGCTGTGGGATAGGGAGATTCACTTTCACCTGAGAA
TCCTCTGCAGGAACCATTTTAAAATGCTTGGAACTATATGTTGAATAATTATACAAAGTTCCAGATTGCAACATGGGGAT
CCCTCATAGTTCATGAGGTCCTTTATTTCTTGTTCTGTTTACCTGGATTTTTGTTTCAATCTATACCTTACATGAAAAAG
TACAAAATTCAAAAGGATAAAGCAGAAACGTGGGGAAATCAATGGAAATATTTTAAAGTATTTCTCTTTAATCATTTTTG
TGTCCAGCTTCTTTGATTTGTGGAACCTATTCTTTTACAGAGTATTTCAATATTCCTTATGATTGGGAAACAATGCCAAG
ATGGTACATGCTTTTGGCAAGATGCTTTGGCTGTGCAGTGATTGAGGATACATGGCACTACTTCCTGCATAGGCTCTTAC
ACCACAAAAGAATACATAAGTATATTCATAAAATTTGTCGTGAGCTTCAGGCGCCGTTTGGAATGGAAGGTGAATATGCA
CATCCTCTGGAAACCCTAATTCTTGGAACTGGATATTTCAATGGAATCATG

ORF - retro_ttru_801 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.29 %
Parental protein coverage: 69.62 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMATNESISIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEVLYFLFCLPGF
M.TNESISIFSSASLAV...DSL.PENPLQEPF.NAWNYMLNNYTKFQIATWGSLIVHEVLYFLFCLPGF
RetrocopyMTTNESISIFSSASLAVG*GDSLSPENPLQEPF*NAWNYMLNNYTKFQIATWGSLIVHEVLYFLFCLPGF
ParentalLFQFIPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQL-PLICGTYYFTEYFNIPYDWETMPRWYMLL
LFQ.IPYMKKYKIQKDK.ETW.NQWK.FKV.LFNHFC.QL..LICGTY.FTEYFNIPYDWETMPRWYMLL
RetrocopyLFQSIPYMKKYKIQKDKAETWGNQWKYFKVFLFNHFCVQL<SLICGTYSFTEYFNIPYDWETMPRWYMLL
ParentalARCLGCAVIEDTWHYFLHRLLHHKRIYKHIHKIHHEFQAPFGMEAEYAHPLETLILGTGFFIGIM
ARC.GCAVIEDTWHYFLHRLLHHKRI.K.IHKI..E.QAPFGME.EYAHPLETLILGTG.F.GIM
RetrocopyARCFGCAVIEDTWHYFLHRLLHHKRIHKYIHKICRELQAPFGMEGEYAHPLETLILGTGYFNGIM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_801 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_801 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 16 parental genes, and 22 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000055961 retrocopy
Choloepus hoffmanni ENSCHOG000000075502 retrocopies
Callithrix jacchus ENSCJAG000000093011 retrocopy
Felis catus ENSFCAG000000230041 retrocopy
Homo sapiens ENSG000000528021 retrocopy
Gorilla gorilla ENSGGOG000000157301 retrocopy
Loxodonta africana ENSLAFG000000070611 retrocopy
Macaca mulatta ENSMMUG000000129941 retrocopy
Nomascus leucogenys ENSNLEG000000065011 retrocopy
Oryctolagus cuniculus ENSOCUG000000037691 retrocopy
Otolemur garnettii ENSOGAG000000092812 retrocopies
Pan troglodytes ENSPTRG000000165741 retrocopy
Pteropus vampyrus ENSPVAG000000137074 retrocopies
Sorex araneus ENSSARG000000135461 retrocopy
Sarcophilus harrisii ENSSHAG000000001351 retrocopy
Tursiops truncatus ENSTTRG00000012897 2 retrocopies
retro_ttru_20, retro_ttru_801 ,



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