RetrogeneDB ID:

retro_ttru_825

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_3568:210026..210572(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSTTRG00000016647
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:RAC2
Ensembl ID:ENSTTRG00000001099
Aliases:None
Description:ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) [Source:HGNC Symbol;Acc:9802]


Retrocopy-Parental alignment summary:






>retro_ttru_825
ATGCAGAGCATCAAGTGTGTGGTGGTAGGCGATGGGGCTGTGGGCAAGACGTGCCTGCTCATCTGCTACACAACCAACGC
CTTTCCCAAGGAGTACATCCCCACAGTGTTCGACAATTATAGCGCCCAGAGTGCCGTTGACGGGCGCACAGTGAACCTGA
ACCTGTGGGACACAGCGGGCCAGGAGGAGTACGACCGCCTCCGCACACTCTCCTACCCTCAGACCAACGTGTTTGTCATC
TGTTTCTCCATTGCCAGTCCGCCCTCCTATGAGAATGTGCGGCACAAGTGGCATCCAGAGGTGTGCCACCACTGCCCCGA
CGTGCCCATCCTCCTGGTGAGCACCAAGAACGACCTGAGAGCCCAGCCTGACACCCTACGGCGCCTGAAGGAGCAGGCCA
GGCACCCATCACACGCAGCAGGGCCAGGCGCTGGCCAAGCAGATCACGCTGTGCGCTACCTCGAGTGCTCAGCCCTGCAG
CAGGACGGCGTCAAAGAAGTGTTTGCTGAGGCTGTCCGGGCCGTGCTCAACCCCACGCCCGTCAAA

ORF - retro_ttru_825 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.97 %
Parental protein coverage: 95.31 %
Number of stop codons detected: 0
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPL
MQ.IKCVVVGDGAVGKTCLLI.YTTNAFP.EYIPTVFDNYSA...VD...VNL.LWDTAGQE.YDRLR.L
RetrocopyMQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTL
ParentalSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKK-LAPIT-
SYPQT.VF.ICFS..SP.SYENVR.KW.PEV.HHCP..PI.LV.TK.DLR...DT...LKE....APIT.
RetrocopySYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVSTKNDLRAQPDTLRRLKEQA<QAPIT<
ParentalYPQGLALAKEI-DSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTR
..QG.ALAK.I...V.YLECSAL.Q.G.K.VF.EA.RAVL.P.P..
RetrocopyTQQGQALAKQI<HAVRYLECSALQQDGVKEVFAEAVRAVLNPTPVK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_825 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_825 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 23 parental genes, and 57 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000098892 retrocopies
Callithrix jacchus ENSCJAG000000021444 retrocopies
Equus caballus ENSECAG000000225702 retrocopies
Erinaceus europaeus ENSEEUG000000095091 retrocopy
Felis catus ENSFCAG000000257762 retrocopies
Gorilla gorilla ENSGGOG000000106122 retrocopies
Loxodonta africana ENSLAFG000000130121 retrocopy
Macropus eugenii ENSMEUG000000122952 retrocopies
Microcebus murinus ENSMICG000000177754 retrocopies
Myotis lucifugus ENSMLUG000000126682 retrocopies
Macaca mulatta ENSMMUG000000188542 retrocopies
Mustela putorius furoENSMPUG000000126822 retrocopies
Nomascus leucogenys ENSNLEG000000147597 retrocopies
Oryctolagus cuniculus ENSOCUG000000161151 retrocopy
Otolemur garnettii ENSOGAG000000041381 retrocopy
Pongo abelii ENSPPYG000000117913 retrocopies
Pteropus vampyrus ENSPVAG000000022812 retrocopies
Sarcophilus harrisii ENSSHAG000000148521 retrocopy
Sus scrofa ENSSSCG000000219444 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000237661 retrocopy
Tursiops truncatus ENSTTRG00000001099 8 retrocopies
Tursiops truncatus ENSTTRG000000057082 retrocopies
Tursiops truncatus ENSTTRG000000118921 retrocopy



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