RetrogeneDB ID:

retro_ttru_84

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_1178:82946..83393(-)
Located in intron of:ENSTTRG00000003384
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:DPPA3
Ensembl ID:ENSTTRG00000000751
Aliases:None
Description:developmental pluripotency associated 3 [Source:HGNC Symbol;Acc:19199]


Retrocopy-Parental alignment summary:






>retro_ttru_84
ATGGATTCATCTGAGGTTAACCCAACCTGGACCCTGGAGTCTCCTCAAACATCCATCGATGAAAATTCCCAGGCAATTCC
AGTTGCCTCTCAACCTATGTCTGAAGTGTTAATAAAGAACCTCAGTAACGTGACGCCCAACCCGAGTATCAAATTGCCAT
TCATTCTACCAGAATGTCTACGTCAACCAACTGGGCGGTTACTTGGTGAAACCATACCCTATAGGAGAGGGGTGAGGACC
GTGTTAACTGATCGGAGAGATAAGATAGAACGTCTGATTCAATCTGTTAAAAAACGCTACAGCAAAGGAGTTCCTCGGTC
TGACTCTCAAAGAGAACCATGGCAGAATGATGTTGAGACTCAGTCAAGAGGGCAAAGGTTTAGAAGTAGCTGTCGTTTTT
GCTGGTTTCACAGAGATCCTTCTGAGGATAATTATGAGAATTATTAC

ORF - retro_ttru_84 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 79.87 %
Parental protein coverage: 95.33 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMDSSE-NPTWTLQSPQMSIDENSQAIPVASEPMSEVLIKDLSRLTLNPSIQLPFILPECLPQPTA-VLGE
MDSSE.NPTWTL.SPQ.SIDENSQAIPVAS.PMSEVLIK.LS..T.NPSI.LPFILPECL.QPT...LGE
RetrocopyMDSSEVNPTWTLESPQTSIDENSQAIPVASQPMSEVLIKNLSNVTPNPSIKLPFILPECLRQPTGRLLGE
ParentalNIPYRRGVRTVLTDRRDKMERL----KKTLRKGVPRSDSEREPWQNDVETQSRGQRFRCSCRFCRFHRDP
.IPYRRGVRTVLTDRRDK.ERL....KK...KGVPRSDS.REPWQNDVETQSRGQRFR.SCRFC.FHRDP
RetrocopyTIPYRRGVRTVLTDRRDKIERLIQSVKKRYSKGVPRSDSQREPWQNDVETQSRGQRFRSSCRFCWFHRDP
ParentalSEDTRISNY
SED.....Y
RetrocopySEDNYENYY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_84 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_84 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 58 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000466091 retrocopy
Canis familiaris ENSCAFG000000320921 retrocopy
Callithrix jacchus ENSCJAG0000000540910 retrocopies
Homo sapiens ENSG000001875696 retrocopies
Gorilla gorilla ENSGGOG000000130404 retrocopies
Mustela putorius furoENSMPUG000000175303 retrocopies
Mus musculus ENSMUSG000000463234 retrocopies
Nomascus leucogenys ENSNLEG000000268872 retrocopies
Otolemur garnettii ENSOGAG000000248137 retrocopies
Pongo abelii ENSPPYG000000042306 retrocopies
Pan troglodytes ENSPTRG000000046177 retrocopies
Rattus norvegicus ENSRNOG000000229504 retrocopies
Tursiops truncatus ENSTTRG00000000751 3 retrocopies
retro_ttru_1293, retro_ttru_1911, retro_ttru_84 ,



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