RetrogeneDB ID:

retro_ttru_86

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_1181:305842..306225(-)
Located in intron of:ENSTTRG00000014206
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS24
Ensembl ID:ENSTTRG00000007845
Aliases:None
Description:ribosomal protein S24 [Source:HGNC Symbol;Acc:10411]


Retrocopy-Parental alignment summary:






>retro_ttru_86
AGCAACGCAGTAACTGTCCGGACCAGGAAGTTCATGACCACCCGACTACTTCAGCGGGAACAAATGGGCACTGCTGTCCT
TCGTCCTGGGAAGGCAACAGTACCTAAGACAGAAATTTGGGGGAAACTAGCCAAAATGTACAAGACCACACCAGATGTCA
CCTTTGTGTTTGGGCTCAGAAGCCATGCTGGTGATGGCAAGACAACTGGCCTTGGCATGATTTACGATCCCTTGGGTCAC
GCGAAGCAGGATGAGCCCAAACACAGGCTTGCAAGACATGGCCTGTACGAGAAGACCTCAAGAAAGCAGCGAAAGGAGCG
CACGAGCAGAATGAAGACGGTCGTGGGGACTGCAGAGGCCAGTTTGGTGCTGACAAAAAGAAG

ORF - retro_ttru_86 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 74.05 %
Parental protein coverage: 98.48 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKTTG
...VT.RTRKFMT.RLLQR.QM...VL.PGKATVPKTEI..KLAKMYKTTPDV.FVFG.R.H.G.GKTTG
RetrocopySNAVTVRTRKFMTTRLLQREQMGTAVLRPGKATVPKTEIWGKLAKMYKTTPDVTFVFGLRSHAGDGKTTG
ParentalFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKANV-GAGKKK
.GMIYD.L..AK..EPKHRLARHGLYEK..TSRKQRKER..RMK.V.GTA.A...GA.KKK
RetrocopyLGMIYDPLGHAKQDEPKHRLARHGLYEK--TSRKQRKERTSRMKTVVGTAEASL<GADKKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_86 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_86 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 7 parental genes, and 20 retrocopies.

Species Parental gene accession Retrocopies number
Gadus morhua ENSGMOG000000125951 retrocopy
Monodelphis domestica ENSMODG000000250913 retrocopies
Ornithorhynchus anatinus ENSOANG000000063291 retrocopy
Pongo abelii ENSPPYG000000023041 retrocopy
Sarcophilus harrisii ENSSHAG000000080903 retrocopies
Sus scrofa ENSSSCG000000103288 retrocopies
Tursiops truncatus ENSTTRG00000007845 3 retrocopies
retro_ttru_1462, retro_ttru_740, retro_ttru_86 ,



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