RetrogeneDB ID:

retro_ttru_866

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_405:157356..157584(-)
Located in intron of:ENSTTRG00000007480
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:HSBP1
Ensembl ID:ENSTTRG00000008666
Aliases:None
Description:heat shock factor binding protein 1 [Source:HGNC Symbol;Acc:5203]


Retrocopy-Parental alignment summary:






>retro_ttru_866
ATGGCAGAGGCTGAGCCCAAGACCATGCAGGATCTCACCTCGGTGGTGCAGACACTCCTGCAACAGATGCAAGATAAATT
TCAGACCATGTCTGACCAGATCATTGGAAGCATTGATGACATGAGCAATCACATTGATGGCCTGGAGAAAAACATCGCAG
ACCTCATGACACAGGCCGGGATGGAAAAGCTGGACGGGGAAAGCAGGATTGCTGCCACACAGAAGACT

ORF - retro_ttru_866 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.82 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAETEPKTVQDLTSVVQTLLQQMQDKFQTMSDQIIGRTLDDMSSRIDDLEKNIADLMTQAGVEELDGENK
MAE.EPKT.QDLTSVVQTLLQQMQDKFQTMSDQIIG...DDMS..ID.LEKNIADLMTQAG.E.LDGE..
RetrocopyMAEAEPKTMQDLTSVVQTLLQQMQDKFQTMSDQIIG-SIDDMSNHIDGLEKNIADLMTQAGMEKLDGESR
ParentalIPATQKS
I.ATQK.
RetrocopyIAATQKT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_866 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_866 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 20 parental genes, and 56 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000064853 retrocopies
Canis familiaris ENSCAFG000000199734 retrocopies
Callithrix jacchus ENSCJAG000000006415 retrocopies
Dasypus novemcinctus ENSDNOG000000153033 retrocopies
Equus caballus ENSECAG000000269201 retrocopy
Homo sapiens ENSG000002309892 retrocopies
Latimeria chalumnae ENSLACG000000225191 retrocopy
Loxodonta africana ENSLAFG000000141122 retrocopies
Macropus eugenii ENSMEUG000000114832 retrocopies
Myotis lucifugus ENSMLUG000000076361 retrocopy
Macaca mulatta ENSMMUG000000201154 retrocopies
Nomascus leucogenys ENSNLEG000000267763 retrocopies
Otolemur garnettii ENSOGAG000000154377 retrocopies
Ochotona princeps ENSOPRG000000056581 retrocopy
Procavia capensis ENSPCAG000000048992 retrocopies
Pan troglodytes ENSPTRG000000084013 retrocopies
Pteropus vampyrus ENSPVAG000000069941 retrocopy
Tupaia belangeri ENSTBEG000000064781 retrocopy
Tarsius syrichta ENSTSYG000000066487 retrocopies
Tursiops truncatus ENSTTRG00000008666 3 retrocopies
retro_ttru_1618, retro_ttru_849, retro_ttru_866 ,



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