RetrogeneDB ID: | retro_ttru_873 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_419:176548..177310(+) | ||
Located in intron of: | ENSTTRG00000005584 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPA2 | ||
Ensembl ID: | ENSTTRG00000007507 | ||
Aliases: | None | ||
Description: | replication protein A2, 32kDa [Source:HGNC Symbol;Acc:10290] |
Percent Identity: | 92.52 % |
Parental protein coverage: | 73.84 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TGGFESYSSSSFGGTGSYTQSPGGFGSPTPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFRIGNVEIS |
T.GFESYSSSSFGG.G.YTQ.PGG.GS.TPSQAEKKSRARAQHIVP.TISQLLSATLVDEVF.IGNVEIS | |
Retrocopy | TSGFESYSSSSFGGAGGYTQFPGGSGSLTPSQAEKKSRARAQHIVPGTISQLLSATLVDEVFKIGNVEIS |
Parental | QVTIVGIIRNAEKAATNIVYKIDDMTAAPMDVRQWVDTDDASSENTVVPPETYVKVAGHLRSFQNKKSLV |
QVTIVGIIRNAEKAATNIVYK.DDMTAAPMDV.QWVDT.DASSENTVVPPETYVKVAGHLRSFQNKKSLV | |
Retrocopy | QVTIVGIIRNAEKAATNIVYKTDDMTAAPMDVHQWVDTGDASSENTVVPPETYVKVAGHLRSFQNKKSLV |
Parental | AFKIMPLEDMNEFTTHILEVVNAHMMLSKSSSLPSAGRAPVSNPGMGEAGNFGGNSFMPTNGLTVAQNQV |
AFKIMPL.DMNEFTTHILEVVN.HMMLSKS.S.PSAGRAP.SNPGMGE.GNFGGNSFMP.NGLTVAQNQV | |
Retrocopy | AFKIMPLKDMNEFTTHILEVVNGHMMLSKSNSQPSAGRAPISNPGMGETGNFGGNSFMPANGLTVAQNQV |
Parental | LNLIKACPRPEGLNFQDLKNQLQHMTVPSIKQAVDFLSNEGHIY |
LNLIKACPRPEGLNFQDLKNQLQHMTV.SIKQAVDFLSNEGHIY | |
Retrocopy | LNLIKACPRPEGLNFQDLKNQLQHMTVASIKQAVDFLSNEGHIY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006225 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000009473 | 1 retrocopy | |
Homo sapiens | ENSG00000117748 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000015287 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000014387 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018172 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009702 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000016194 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000015583 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001651 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000000420 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000001449 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000004433 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000010706 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000007507 | 1 retrocopy |
retro_ttru_873 ,
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