RetrogeneDB ID: | retro_ttru_897 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_542:601386..602198(-) | ||
Located in intron of: | ENSTTRG00000008310 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BTBD10 | ||
Ensembl ID: | ENSTTRG00000013943 | ||
Aliases: | None | ||
Description: | BTB (POZ) domain containing 10 [Source:HGNC Symbol;Acc:21445] |
Percent Identity: | 89.71 % |
Parental protein coverage: | 56.84 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | TRPNEKGEYEVAEGIGSTVFRAILDYYKTGIIRCPDGISIPELREACDYLCISFEYSTIKCRDLSALMHE |
T.P.EKGEYEVAEGIGSTVFRAILDYYKTGII.CP.GISIPELRE.CD.LCISFEYSTIKCRDLSALMHE | |
Retrocopy | TCPSEKGEYEVAEGIGSTVFRAILDYYKTGIIHCPNGISIPELREPCDSLCISFEYSTIKCRDLSALMHE |
Parental | LSNDGARRQFEFYLEEMILPLMVASAQSGERECHIVVLTDDDVVDWDEEYPPQMGEEYSQIIYSTKLYRF |
LSNDGARRQFEFYL.EM.LPLMVASAQSG..ECHIVVLT.DDVVDWDEEYPPQMGE.YSQIIYSTKLYRF | |
Retrocopy | LSNDGARRQFEFYLKEMTLPLMVASAQSGDHECHIVVLTGDDVVDWDEEYPPQMGE*YSQIIYSTKLYRF |
Parental | FKYIENRDVAKSVLKERGLKKIRLGIEGYPTYKE-KVKKRPGGRP-EVIYNYVQRPFIRMSWEKEEGKSR |
FKYIENR.VAKSVL.ERGLKK.RLGI.G.PTYKE.KVK....G.P.EVIYNYVQRPFIRM.WEKEEGKSR | |
Retrocopy | FKYIENRVVAKSVLMERGLKKTRLGIKGCPTYKE>KVKEKAWGLP>EVIYNYVQRPFIRMFWEKEEGKSR |
Parental | HVDFQCVKSKSITNLAAAAADIPQDQLVVMHPTPQVDELDILPIHPPSSNNDLDPDAQNPML |
.VDFQCVKSKSITNLAAAAADIPQDQLVVMHPTPQVDELDI.PIHPPSSNNDLDPDAQN.ML | |
Retrocopy | CVDFQCVKSKSITNLAAAAADIPQDQLVVMHPTPQVDELDIFPIHPPSSNNDLDPDAQNLML |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000024984 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000008728 | 1 retrocopy | |
Mus musculus | ENSMUSG00000038187 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017691 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000739 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000003377 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000014341 | 2 retrocopies | |
Sorex araneus | ENSSARG00000000266 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000013395 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000000445 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000013943 | 1 retrocopy |
retro_ttru_897 ,
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