RetrogeneDB ID:

retro_ttru_909

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_600:4984..5193(+)
Located in intron of:ENSTTRG00000016983
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:HRSP12
Ensembl ID:ENSTTRG00000016066
Aliases:None
Description:heat-responsive protein 12 [Source:HGNC Symbol;Acc:16897]


Retrocopy-Parental alignment summary:






>retro_ttru_909
TTGTTAAGAAATTTAGAGTCCCATGCCCCAGCGGCCATTGGTCCCTACAGTCAGGCTGTGTTAGTTGCAGGACCATTTAC
GTTTCAGGACAGCTAGGCATGGACCCTGCAAATGGACAGCTTGTGCCAGGAGGGGTGGCAGAAGAGTCTAAACAGGCTCT
TACAAACATGGGTGAAATTCTGAAAGCAGTAGGCTGTGAGTTCACGAAT

ORF - retro_ttru_909 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.46 %
Parental protein coverage: 52.63 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalLIRVISAKAPAVLGPYSQAVLVD-RTIYISGQLGMNPASGQLVPGGVAEEAKQALTNMGEILKAAGCDFT
L.R.....APA..GPYSQAVLV..RTIY.SGQLGM.PA.GQLVPGGVAEE.KQALTNMGEILKA.GC.FT
RetrocopyLLRNLESHAPAAIGPYSQAVLVA<RTIYVSGQLGMDPANGQLVPGGVAEESKQALTNMGEILKAVGCEFT
ParentalN
N
RetrocopyN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_909 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_909 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 24 parental genes, and 75 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000005751 retrocopy
Bos taurus ENSBTAG000000125955 retrocopies
Canis familiaris ENSCAFG000000302501 retrocopy
Choloepus hoffmanni ENSCHOG000000012788 retrocopies
Callithrix jacchus ENSCJAG000000155602 retrocopies
Dasypus novemcinctus ENSDNOG000000251383 retrocopies
Felis catus ENSFCAG000000021671 retrocopy
Homo sapiens ENSG000001325413 retrocopies
Gorilla gorilla ENSGGOG000000011851 retrocopy
Loxodonta africana ENSLAFG000000020781 retrocopy
Microcebus murinus ENSMICG0000000435613 retrocopies
Macaca mulatta ENSMMUG000000118252 retrocopies
Monodelphis domestica ENSMODG000000065751 retrocopy
Mustela putorius furoENSMPUG000000152531 retrocopy
Nomascus leucogenys ENSNLEG000000024853 retrocopies
Ornithorhynchus anatinus ENSOANG000000215321 retrocopy
Otolemur garnettii ENSOGAG000000014653 retrocopies
Pongo abelii ENSPPYG000000187763 retrocopies
Pan troglodytes ENSPTRG000000204573 retrocopies
Sus scrofa ENSSSCG000000060791 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000114524 retrocopies
Tarsius syrichta ENSTSYG000000030856 retrocopies
Tursiops truncatus ENSTTRG00000016066 5 retrocopies
Vicugna pacos ENSVPAG000000082773 retrocopies



Copyright © RetrogeneDB 2014-2017