RetrogeneDB ID: retro_ttru_914

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_622:338210..339125(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PXK
• Ensembl ID: ENSTTRG00000015393
• Aliases: None
• Description: PX domain containing serine/threonine kinase [Source:HGNC Symbol;Acc:23326]

Sequence

>retro_ttru_914
GTACTAAAGTTTCTCCACGACAAGGGATTCCCTTATGGGCATCTTCATGCTTCCAACGTGATGCTGGAAGGGGACGCTTG
CCAGCTGCTGGACCTTGAGAATTCCTTGTTGGGCCTTCCTTCCTTCTACTGATCTTATTTCTCACAATTCAGGAAAATCA
ACACATTGGAGGGTGTGGACGTTCACTGCTTTGGCCACTTACTGTATGAAATGACTTACGGACGACCGCCAGACTCAGTG
CCTGTACACTCCTTCCCTCCTGCACCGTCTGTGGCTGTGGTGGCCATGTTGGAGTCTATGCTGTCTTGTGAAGCCTGTAA
AAATGGCATGCCCACCGTCTCCCTGCTCTTACAGATGCCATTATTCAGTGATGTTCTGCTAACTACTTCCAAAAAGCCAC
AGTTTAAGATCCCCACAAAGTTAAAAGAGGCATTGAGAATTGCCAAAGAATGTATAGAAAAGAGGCTAATTGAAGAACAG
AAACAGATCCACCAGCATCGAAGACTGACGAGAGCTCAGTCTCACCATGGATCCGAAGAAGAAAGAAAAAAGAGGAAGAT
CTTAGCTTGGAAGAAGTCAAAACGATCTGCTGTTGAAAATAGTGAAGAGCATTCAGCAAAATACAGCAACTCCAGTAATT
CAGCAGGATCTGGGGCCAGCTCACCTCTCACATCCCCGTCATCGCCGACTCCACCCTCCACACCAGGGATGTCCGCGTTA
CCCCCACCTCCTCCACCTGCGCCTCCGCCACCAGCAGCTCCCTTGCCTCCTGTGAGCACAGAGGCGCCCACACAGCTTCC
GCCCCAGGCTGTGAATGGCGTGAGCCGAGGGGCCTTACTCAGCTCCAACCAGAATTTCCAAAAAGGAACTTGGAGGAAAG
CCGAAACCTGTGATCATAACGCTCCCAAGATCGGC

Alignment

ORF - retro_ttru_914 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.1 %
• Parental protein coverage: 52.68 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VLKFLHDKGFPYGHLHASNVMLEGDACRLLDLENSLLGLPSFYRSYFSQFRKINTLESVDVHCFGHLLYE
          VLKFLHDKGFPYGHLHASNVMLEGDAC.LLDLENSLLGLPSFY.SYFSQFRKINTLE.VDVHCFGHLLYE
Retrocopy VLKFLHDKGFPYGHLHASNVMLEGDACQLLDLENSLLGLPSFY*SYFSQFRKINTLEGVDVHCFGHLLYE

Parental  MTYGRPPDSVPVDSFPPAPSMAVVAVLESTLSCEACKNGMPTVSRLLQMPLFSDVLLTTSEKPQFKIPTK
          MTYGRPPDSVPV.SFPPAPS.AVVA.LES.LSCEACKNGMPTVS.LLQMPLFSDVLLTTS.KPQFKIPTK
Retrocopy MTYGRPPDSVPVHSFPPAPSVAVVAMLESMLSCEACKNGMPTVSLLLQMPLFSDVLLTTSKKPQFKIPTK

Parental  LKEALRIAKECIEKRLIEEQKQIHQHRRLTRAQSHHGSEEERKKRKILARKKSKRSAVENNEEHSAKYSN
          LKEALRIAKECIEKRLIEEQKQIHQHRRLTRAQSHHGSEEERKKRKILA.KKSKRSAVEN.EEHSAKYSN
Retrocopy LKEALRIAKECIEKRLIEEQKQIHQHRRLTRAQSHHGSEEERKKRKILAWKKSKRSAVENSEEHSAKYSN

Parental  SNNSAGSGASSPLTSPSSPTPPSTAGMSTLPPPPPPAPPPPAAPLPPASTEAPTQLPPQAVNGVSRGALL
          S.NSAGSGASSPLTSPSSPTPPST.GMS.LPPPPPPAPPPPAAPLPP.STEAPTQLPPQAVNGVSRGALL
Retrocopy SSNSAGSGASSPLTSPSSPTPPSTPGMSALPPPPPPAPPPPAAPLPPVSTEAPTQLPPQAVNGVSRGALL

Parental  SSIQNFQKGTLRKAETCDHSAPKIG
          SS.QNFQKGT.RKAETCDH.APKIG
Retrocopy SSNQNFQKGTWRKAETCDHNAPKIG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_914 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_914 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tursiops truncatus	ENSTTRG00000015393	1 retrocopy	retro_ttru_914 ,