RetrogeneDB ID: | retro_ttru_932 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_715:665131..666625(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTTRG00000011785 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ALDH1A2 | ||
Ensembl ID: | ENSTTRG00000002361 | ||
Aliases: | None | ||
Description: | aldehyde dehydrogenase 1 family, member A2 [Source:HGNC Symbol;Acc:15472] |
Percent Identity: | 64.66 % |
Parental protein coverage: | 96.14 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | ASLHLLPSPTPNLEIKYTKIFINNEWQNSESGRVFPVYNPATGEQVCEVQEADKADIDKAVQAARLAFSL |
.S...LPSP..N..I.Y...FINNEWQ...S...FP..NPATGE....V.E.D.AD.D.AV.AAR.AF.L | |
Retrocopy | SSAAALPSPILNPDIRYNQLFINNEWQDAVSKKTFPTVNPATGEVIGHVAEGDRADVDRAVKAAREAFQL |
Parental | GSVWRRMDASERGRLLDKLADLVERDRAVLATMESLNGGKPYLQAFYVDLQGVIKTLRYXXXXXXXXXXX |
GS.WRRMDASERGRLL..LADLVERDR..LA..E.L..GKP.......DL..VIK..RY........... | |
Retrocopy | GSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQESYFLDLDEVIKVYRYFAGWADKWHGK |
Parental | XXXVDGDYFTFTRHEPVGVCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAG |
....DG..F.FT.HEP.GVCGQIIPWNFPL.M..WK.APAL..GNTVV.K.AEQTPLSALY...L.KEAG | |
Retrocopy | TIPMDGEHFCFTLHEPIGVCGQIIPWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSALYLASLVKEAG |
Parental | FPPGVINILPGYGPTAGAAIASHVGIDKIAFTGSTEVGKLIQEAAGRSNLKRVTLELGGKSPNIIFADAD |
FPPGV.NI..GYGPTAGAAIA.H..IDK.AFTGSTEVG.LIQ.AAG.SNLKRVTLELGGKSP.I..ADAD | |
Retrocopy | FPPGVVNIVTGYGPTAGAAIAHHMDIDKVAFTGSTEVGHLIQKAAGESNLKRVTLELGGKSPSIVLADAD |
Parental | LDYAVEQAHQGVFFNQGQCCTAGSRIFVEESIYEEFVRRSVERAKRRIVGSPFDPTTEQGPQIDKKQYNR |
.D.AVEQ.H...FFN.GQCC.AGSR.FVEESIY.EF..R.VE.AK.R.VG.PF...T.QGPQ.DK.Q..R | |
Retrocopy | MDHAVEQCHEALFFNMGQCCCAGSRTFVEESIYDEFLERTVEKAKQRKVGNPFELDTQQGPQVDKEQFER |
Parental | ILELIQSGVAEGAKLECGGKGLGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANN |
IL..IQ.G..EGAKL.CGG..LG..GFFI.PTVF..V.DDMRIAKEEIFGPVQ....F....EV.ERAN. | |
Retrocopy | ILGYIQLG*KEGAKLLCGGERLGERGFFIKPTVFGGVQDDMRIAKEEIFGPVQPLFKFRKVEEVVERANS |
Parental | SDFGLVAAVFTNDINKALTVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGEFGLREYSEVKTVT |
...GL.AAVFT.D..KA.....A.QAGTVW.N.YN......PFGGFK.SGNGRE.GE.GL..Y.EVKTVT | |
Retrocopy | TRYGLAAAVFTRDLDKAMYFTQALQAGTVWVNTYNVVTCHTPFGGFKESGNGRELGEDGLKAYTEVKTVT |
Parental | VKIPQKNS |
.K.PQKNS | |
Retrocopy | IKVPQKNS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006418 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000012262 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000008641 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007113 | 1 retrocopy | |
Sorex araneus | ENSSARG00000012720 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000012217 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004549 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000002361 | 1 retrocopy |
retro_ttru_932 ,
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