RetrogeneDB ID: | retro_ttru_946 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_748:326574..326999(+) | ||
Located in intron of: | ENSTTRG00000003061 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BAG1 | ||
Ensembl ID: | ENSTTRG00000010573 | ||
Aliases: | None | ||
Description: | BCL2-associated athanogene [Source:HGNC Symbol;Acc:937] |
Percent Identity: | 54.3 % |
Parental protein coverage: | 51.43 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | ARSEEMAAAG-LSVTVTHSNEKHDLQVIPQEGCSEPIVQDLAQVVEEATGVPLPFQKLIFKGKSLKEMET |
A.S...A..G...V..T.S.EKH.....PQ.GCSEPI..DLA..VEEA.GV.LPF.KLIFKGKS...ME. | |
Retrocopy | AHSKVLAGPG<VRVNITDS-EKHGVHISPQQGCSEPIL*DLACLVEEARGVLLPF*KLIFKGKSSQAMEQ |
Parental | PLSALGIQNGCRVMLIGKK-NSPEEEVE----IKKLKDLEKSVEKIADQLE-ELSKELTGIQQGFLAKDL |
P.S.LG....CR.M..G...NS.EE..E.....K.L.DLEKSV.K.ADQLE......L...Q..FLAKDL | |
Retrocopy | PWSGLG---KCR-MITGSR>NSDEEQSEGRADLKTLSDLEKSVQKTADQLE<GMNEKLLAQQD-FLAKDL |
Parental | QAEALCKLDRR |
..E.LCKL.RR | |
Retrocopy | *PETLCKLYRR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000017845 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012656 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000008074 | 1 retrocopy | |
Equus caballus | ENSECAG00000017942 | 1 retrocopy | |
Homo sapiens | ENSG00000107262 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000016534 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020148 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005204 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008945 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019138 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000020856 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000010573 | 2 retrocopies |
retro_ttru_252, retro_ttru_946 ,
|