RetrogeneDB ID:

retro_ttru_950

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_769:363413..364257(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTTRG00000008145
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ttru_950
TTCCATGGGATTGAAAACTTCACCAATGAAGCTTCTTACATGAGTATATTAGGAATGACACCAGGATTTGGAGATAAAAC
ATTTGTTGTTCAGGGATTTGGTAATGTGGGCCTGCCCTCTATGAGATATTTACATCATTTTGGTGCTAACTGTGTTGGTG
TTGGTGAATCTGATGGGAACATATGGAATCCAGATGGTATTGACGCAAAGGAACTGGAAGACTTCAAATTGCAACATGGA
ACAATCCTGGGCTTCCCCAAAGCAAAGATCTATGAAGGGAGCATCTTGGAGGCAGACTGTGACATACTGATCCTTGCTGC
CAACGAGAAGCAGCTGACCAAGTCCAATACACCCAGAGTCAAAGCCAAGATCATTGCTGAAGGTGCCAACGACTGACAAC
TCCAGAAGCTGGTAAGATTTTCCTAGAGAGGAACGTCATGGTTATTCCAGATGTCTACTTGAATGCTGGAGGAGTGACAG
TACGTTACTTTGAGTGGCTGAAGAATCTGAATCATGTCAGCTATGGCCGTTTGACCTTCAAATATGAATGGGATTCTAAC
TACCACTTGCTCATGTCTGTTCAAGAGAGTTTGGAAAGGAAATTTGGAAAGCATGGTGGAACCGTTCCCATTGTACCCAC
AGCAGAGTTCCAAGACAGGATATCGGGTGCCTCTGAGAAAGACGTCGTGCACTCTGGCTTAGCTTACACCATGGAGCGCT
CTGCCAGGCAAGTCATGCGCACCGCCGTGAGCTATAACCTAGGCTTGGACCCGAGAACAGCTGCCTATGTCAACGCCATC
GAGAAAGTCTTCAAGGTTACAATGAAGCTGGTGTGACCTTCACA

ORF - retro_ttru_950 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 91.55 %
Parental protein coverage: 50.27 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCVGVGESDGSIWNPDGIDPK
FHGIENF.NEASYMSILGMTPGFGDKTFVVQGFGNVGL.SMRYLH.FGA.CVGVGESDG.IWNPDGID.K
RetrocopyFHGIENFTNEASYMSILGMTPGFGDKTFVVQGFGNVGLPSMRYLHHFGANCVGVGESDGNIWNPDGIDAK
ParentalELEDFKLQHGTILGFPKAKIYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANG-PTTPEADK
ELEDFKLQHGTILGFPKAKIYEGSILEADCDILI.AA.EKQLTKSN.PRVKAKIIAEGAN...TTPEA.K
RetrocopyELEDFKLQHGTILGFPKAKIYEGSILEADCDILILAANEKQLTKSNTPRVKAKIIAEGAND<LTTPEAGK
ParentalIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTI
IFLERN.MVIPD.YLNAGGVTV.YFEWLKNLNHVSYGRLTFKYE.DSNYHLLMSVQESLERKFGKHGGT.
RetrocopyIFLERNVMVIPDVYLNAGGVTVRYFEWLKNLNHVSYGRLTFKYEWDSNYHLLMSVQESLERKFGKHGGTV
ParentalPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFKV-YNEAG
PIVPTAEFQDRISGASEKD.VHSGLAYTMERSARQ.MRTA..YNLGLD.RTAAYVNAIEKVFKV.YNEAG
RetrocopyPIVPTAEFQDRISGASEKDVVHSGLAYTMERSARQVMRTAVSYNLGLDPRTAAYVNAIEKVFKV<YNEAG
ParentalVTFT
VTFT
RetrocopyVTFT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_950 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_950 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 20 parental genes, and 28 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000075402 retrocopies
Canis familiaris ENSCAFG000000160951 retrocopy
Choloepus hoffmanni ENSCHOG000000011011 retrocopy
Callithrix jacchus ENSCJAG000000116331 retrocopy
Dipodomys ordii ENSDORG000000097671 retrocopy
Equus caballus ENSECAG000000073712 retrocopies
Echinops telfairi ENSETEG000000196382 retrocopies
Homo sapiens ENSG000001486721 retrocopy
Gorilla gorilla ENSGGOG000000157701 retrocopy
Loxodonta africana ENSLAFG000000120591 retrocopy
Microcebus murinus ENSMICG000000165261 retrocopy
Monodelphis domestica ENSMODG000000027561 retrocopy
Nomascus leucogenys ENSNLEG000000116581 retrocopy
Otolemur garnettii ENSOGAG000000036411 retrocopy
Procavia capensis ENSPCAG000000086621 retrocopy
Pongo abelii ENSPPYG000000028273 retrocopies
Pan troglodytes ENSPTRG000000027114 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000128431 retrocopy
Tarsius syrichta ENSTSYG000000015781 retrocopy
Tursiops truncatus ENSTTRG00000008145 1 retrocopy
retro_ttru_950 ,



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