RetrogeneDB ID:

retro_ttru_997

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_936:336969..337271(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ENY2
Ensembl ID:ENSTTRG00000001742
Aliases:None
Description:enhancer of yellow 2 homolog (Drosophila) [Source:HGNC Symbol;Acc:24449]


Retrocopy-Parental alignment summary:






>retro_ttru_997
ATGGTGGTTAGTAAAATGAACAAAGATGAGTAGATGATAGCAGCGATTAACCAAAAGTGGATAGAAACTGGAGAAAGAGA
ACACGTCAAAAAATTGCTAGAGCTAAATTAATTGAATGTGGCTGGAAGGATCTGTAGAAGGCACACTGTAAAGAGGTAAT
GAAAGAAAAAGGACTAGAACACGTTACTGTTGATGACTTGGTGGCTGAAATCACACCAAAAGGCAGAGCCCTGGTACCTG
ACAGTGTAAAGAAGGAGCTCCTACAAAGAATAAGAACATCCCTTGCTCAGCATGCCAGCCTT

ORF - retro_ttru_997 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.24 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMVVSKMNKDAQMRAAINQKLIETGERERLKELL-RAKLIECGWKDQLKAHCKEVIKEKGLEHVTVDDLVA
MVVSKMNKD..M.AAINQK.IETGERE..K.LL.RAKLIECGWKD..KAHCKEV.KEKGLEHVTVDDLVA
RetrocopyMVVSKMNKDE*MIAAINQKWIETGEREHVKKLL<RAKLIECGWKDL*KAHCKEVMKEKGLEHVTVDDLVA
ParentalEITPKGRALVPDSVKKELLQRIRTFLAQHASL
EITPKGRALVPDSVKKELLQRIRT.LAQHASL
RetrocopyEITPKGRALVPDSVKKELLQRIRTSLAQHASL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_997 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_997 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 21 parental genes, and 43 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000030391 retrocopy
Bos taurus ENSBTAG000000073871 retrocopy
Callithrix jacchus ENSCJAG000000063894 retrocopies
Cavia porcellus ENSCPOG000000109881 retrocopy
Dasypus novemcinctus ENSDNOG000000073771 retrocopy
Equus caballus ENSECAG000000235651 retrocopy
Erinaceus europaeus ENSEEUG000000123833 retrocopies
Echinops telfairi ENSETEG000000108822 retrocopies
Microcebus murinus ENSMICG000000129483 retrocopies
Myotis lucifugus ENSMLUG000000275851 retrocopy
Macaca mulatta ENSMMUG000000061042 retrocopies
Mustela putorius furoENSMPUG000000058732 retrocopies
Mus musculus ENSMUSG000000223383 retrocopies
Nomascus leucogenys ENSNLEG000000042843 retrocopies
Pongo abelii ENSPPYG000000258881 retrocopy
Rattus norvegicus ENSRNOG000000046811 retrocopy
Sorex araneus ENSSARG000000098451 retrocopy
Sarcophilus harrisii ENSSHAG000000017874 retrocopies
Tupaia belangeri ENSTBEG000000002734 retrocopies
Tarsius syrichta ENSTSYG000000055901 retrocopy
Tursiops truncatus ENSTTRG00000001742 3 retrocopies
retro_ttru_46, retro_ttru_845, retro_ttru_997 ,



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