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Detailed information on CNT0001002


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|F4J5S1|CLU_ARATH, E-value = 2e-08

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0030114, E-value = 3e-14 (O. sativa)

Expression of CNT0001002

Peptides detected in this lncRNA

>peptide 1 (42 aa)
SSVWMRWATSEPARCVEVCNRKQQDPHSSSWYQDDPDLTLSR*

Sequence

>CNT0001002
CAGCAGTGTTTGGATGAGATGGGCCACTTCAGAGCCAGCTCGGTGTGTTGAAGTCTGTAATAGAAAACAGCAAGATCCCCATAGCTCTTCATGGTATCAG
GATGATCCAGACCTAACTCTCTCTCGTTGATATCCAAAGCTTTTTGTTGATAAATTGTAGCCTGCGATTTAAGTAAAAAACTTGATGAATTGAAATCAAA
TCCTGAAACTCTACTAAATCAAAAAGAGAATAGATATTTTGGCATAAACAATGGCTGAAATATTTAATTAAAATGCCTATTGCATAAAGCAAACAAACAA
GCCTATCCCACTGGATGGTGTCAATAACATGGACCAAAGAATGTCATTGACCATTGGGCCCTATTAAAAACCAAATTACATGGAGCCAGGTCCTTTTTAA
AGGTTTTACCGGTAGTTTGCTCTGGACTATACCCTTCCTCTACTTTTAATTGAATTATTTTCCATTTGATAAGATTTCAACAGAATGTGAATTTTTTTTT
TTGGTGAATATAATTATGTAAATAATGGTTTCTGATGAAACAATGTCCACCAATACCAAAACATAAATGAGACAAATAAGACCTGATTGAAATCTCCAGT
ATGATATAAAACTACAGCAAGGAGGCTGTAGGCTCCCGC

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA07G06165.1 Uncharacterized protein protein coding CNT0001002 1658 614 CDS Cis
GLYMA07G06165.2 Uncharacterized protein protein coding CNT0001002 1658 614 CDS Cis
GLYMA07G06165.3 Uncharacterized protein protein coding CNT0001002 1658 614 CDS Cis
GLYMA16G02770.2 Uncharacterized protein protein coding CNT0001002 1282 627 CDS Trans
GLYMA16G02770.3 Uncharacterized protein protein coding CNT0001002 1282 627 CDS Trans
GLYMA16G02770.4 Uncharacterized protein protein coding CNT0001002 1282 627 CDS Trans
GLYMA16G02770.5 Uncharacterized protein protein coding CNT0001002 1282 627 CDS Trans