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Detailed information on CNT0010524


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SHI3|RLP2_ARATH, E-value = 6e-23

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004105, E-value = 6e-06 (V. vinifera)
CNT0043554, E-value = 4e-07 (A. thaliana)
CNT0035015, E-value = 6e-09 (P. patens)
CNT0017823, E-value = 2e-08 (Z. mays)
CNT0000395, E-value = 4e-13 (G. max)
CNT0024048, E-value = 2e-09 (A. trichopoda)
CNT0030194, E-value = 1e-06 (O. sativa)
CNT0037290, E-value = 2e-08 (C. reinhardtii)

Expression of CNT0010524

Peptides detected in this lncRNA

>peptide 1 (29 aa)
PGNARRKRLRVITITNSLITISLIETLNL*

>peptide 2 (159 aa)
MSEEGGKMNREAPAMVAATGEPLPANYYYGTFQGVANYQTPPSQSQPVLGFPQPIPPPGVPVVPPCYYPHGYQTVQGYVVAEGRPIREHRLPCCGMGIGW
FLFIIGFFLGAIPWYIGAFLLLCARLDYREKPGFIACTLAATLALVAVTLGATKVNYSW*

>peptide 3 (31 aa)
MKGKGIFTNMSTVGFHWVCCLESSFITAICI*

>peptide 4 (33 aa)
MHLSSYTCFGCCDSWCNKGKLFLVRDRFMLQML*

>peptide 5 (60 aa)
MLPFNLLQERSKLSISCRLEKVFGILPMRWLCDRFNACILLMFPNSTGISPVNLLLERSIP

>peptide 6 (50 aa)
MYSSKVFVKMANINAVFDLEDCTILFFGFLWKRLTIHLALYRFRLFCFGL*

Sequence

>CNT0010524
GTCCGGGCAATGCTAGGCGTAAACGTCTCCGAGTGATCACTATAACAAATTCGCTGATCACAATCTCTTTGATCGAAACCCTAAACCTTTGATCGATCGA
ACGGTGAAGAATGAGCGAAGAGGGTGGAAAGATGAACAGAGAAGCTCCGGCAATGGTGGCAGCCACCGGCGAGCCATTGCCGGCTAACTATTACTACGGG
ACATTTCAAGGAGTCGCCAATTATCAAACTCCTCCTTCGCAATCTCAACCGGTCTTGGGTTTCCCTCAACCTATACCTCCTCCAGGTGTCCCCGTTGTTC
CTCCGTGTTACTATCCTCATGGTTATCAGACCGTTCAAGGTTATGTTGTTGCCGAAGGTAGACCCATAAGGGAGCATCGGCTTCCTTGCTGTGGTATGGG
AATTGGCTGGTTCTTGTTCATTATTGGTTTCTTTCTTGGTGCCATTCCCTGGTACATTGGAGCTTTTCTTCTTTTGTGTGCTCGGCTCGATTATAGAGAA
AAACCTGGATTTATTGCATGCACCTTAGCAGCTACACTTGCTTTGGTTGCTGTGACTCTTGGTGCAACAAAGGTAAATTATTCCTGGTGAGAGACCGATT
CATGCTGCAAATGTTGTAAATTCACACACACACACACACACACACACACATATATATATATATATATATAAAGGAAACGAAAGATAAATGAAAGGGAAGG
GAATTTTCACGAATATGTCCACAGTGGGATTTCACTGGGTATGTTGTTTGGAATCGTCGTTTATTACTGCAATTTGTATATAGCAGATACCAACTGAGTG
ATGCCTATATTCTGGTAATGCAATTCTAAGTTAGTCTTGGTTCAATGTATTCTTCTAAAGTATTTGTTAAAATGGCCAATATAAATGCAGTATTTGATTT
GGAGGATTGTACTATATTGTTTTTTGGATTCCTATGGAAGAGGTTGACAATACATTTAGCATTGTATCGTTTTAGGTTATTTTGTTTTGGTCTATGACTG
TCTCCTTAAGGACAGTAAAAGCCCGTTTGGATTGGCTTAAAAAAAGTAGTCAAAAATAAAAAGTCAAACTGAAATGATTTTTAAGTCAAAAAAATAAAAA
GTATGGCTTAAGTCAAAGTGTTTTGCAAAATCGAAGTTAAAAAAAGGCATACATGAGTCTTTTCTTTAACCACAATGACATAGATGAGCCAAACTTTAAA
AAAAGGATATAAATAAGTTTTTTCTGAAAGTTTGATGACATATTTGAACATTTTCACTTGATTTTAACCATCACGTGTTCCTCTGTTCTATTGGTTAACG
ATTCATAATTTGGACTGTTGGATCTCGAGATATAAATTTTTTCGCTAATACTAGGCCAAAGTGTGATCAGAATTCCAAGCATGTACCTAATTTCAGAAAT
TGATTGCGACCCATCGGAGAGGAGTTTTACAGTGAATGAGTCTTCGGATAGAGCACCAGTTTAATTAATCGAGGCCATTTCTTGTTCATCCCCGGCCCCT
ATAGCAGCTTGGAATGACCTTTATGGTGTAAGTTGGAGGGGTAGTCTGCTGCAAGTGTAGCGTTGAGCGAGATGCCATACGATCGAGCATAGGTAGGAAT
TCCTGACAGCAGGAAGAGAGAAAATGGAGTTGGGTGATGAACTAAGGCTTTCTATCTCTCAATCAATTTGGACCAAACAATGTTAGGACTCATCCCACAC
TTGTTGTCTAATGGATAACCGCAAAGAAAAGGATTTCCCTCGTAGCTGCTTTTGTTGAAAGTTCCAAATTGAGCTTTAAAATCAGGCACTGCACCCGATA
AGTTGTTGTATGCAACACTGAATACTGCCAACGAATTTAGCTCAAGTAGACCAACAGGAATGCTCCCATTCAATCTGTTGCAGGAAAGGTCTAAACTCTC
GATTTCCTGTAGATTGGAGAAGGTATTTGGTATTCTTCCGATGAGATGGTTGTGCGATAGATTCAATGCATGTATATTGCTCATGTTCCCTAACTCAACA
GGAATTTCACCAGTTAATCTATTACTTGAGAGATCAATACCCG

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
PGSC0003DMT400093474 AtRLP45 (Receptor 45); protein binding protein coding CNT0010524 1018 362 CDS Cis