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Detailed information on CNT0010904


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9M9L0|APC11_ARATH, E-value = 3e-56

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0007009, E-value = 1e-61 (V. vinifera)
CNT0042380, E-value = 5e-42 (A. thaliana)
CNT0034732, E-value = 8e-07 (P. patens)
CNT0001132, E-value = 2e-38 (G. max)
CNT0022405, E-value = 2e-32 (A. trichopoda)

Expression of CNT0010904

Peptides detected in this lncRNA

>peptide 1 (87 aa)
MKCTNEGYEIWHTVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQSAQAHCPMCRREWQFKE*

>peptide 2 (44 aa)
MMAVEGMNSKFKSTTRILCFVPLERRGKKCLLSIDIFQYYSVCV*

>peptide 3 (44 aa)
MKAMKYGTPLLHGHGTRKMKLVVYAGWLLMVVVLIANSLVMTVH*

>peptide 4 (64 aa)
MTRFKLSLWMQLLIFFLFYLRDVKTKQDWFLMICKLASCCINVRLIKLVVIVGHKIWCQRVCIK*

>peptide 5 (31 aa)
MGCLQPCISSSLYLEVGEFSICSSTLSHVPS*

Sequence

>CNT0010904
ATTTTTCACTAGTTTTTCCGCCATTTTCAAAGTTCGTGTAAAGCCCTAAAAAGAAAGATAATTTCAGTTCAATCTTCACCCAGAAACTCATAATCCATAG
ATTAACGCATCAATTTTGTCTCAGAAAAAAAGAGCGAGCCAATGAAAGTCAAGATTTTGCGTATCCTTTTGTGGTTATTTCACTGATGATATGAAATGTA
CAAATGAAGGCTATGAAATATGGCACACCGTTGCTTCATGGACATGGGACGCGCAAGATGAAACTTGTGGTATATGCAGGATGGCTTTTGATGGTTGTTG
TCCTGATTGCAAACTCCCTGGTGATGACTGTCCACTAATATGGGGTGCTTGCAACCATGCATTTCATCTTCATTGTATCTTGAAGTGGGTGAATTCTCAA
TCTGCTCAAGCACATTGTCCCATGTGCCGTCGTGAATGGCAGTTCAAAGAATGAACAAAGATGATGGCAGTAGAAGGAATGAATTCAAAATTTAAGTCCA
CAACTAGGATTCTATGTTTCGTGCCTCTTGAGAGAAGGGGTAAAAAGTGCTTGCTTTCTATTGATATATTTCAGTATTACAGTGTCTGTGTGTGATAGTA
TGATATTATAGCGAGCATAGTTGTGTTCATCCCGATATACAATTATCAGTTTAAGCCTATATGGCCAAGAATAGGTAGTGTATTTGTATCAGCCTTGGAA
GCAGGTGTTGAAGTTTTACGGCCATGCCATCGATCCGGATTCTTTAACTGAGATATTCTTCTATCTGAAGATGACAAGATTCAAGCTTAGCTTATGGATG
CAGCTTCTTATATTCTTTCTTTTCTATCTGAGAGATGTGAAAACCAAACAAGACTGGTTTTTGATGATATGTAAGTTGGCTTCATGTTGTATAAACGTGA
GACTCATTAAATTAGTGGTCATTGTTGGGCACAAAATCTGGTGTCAACGTGTGTGTATTAAATAAAAAGACATGGGCAAGTAGTCCATGTGTATGAGTCA
GCTTTTTTATAAGGGTACGTAGTGCTTTTGTACTATCTTTCTGACTAAAAGCAGATTTGGTTGCTACTGCCTAAAGCAAAGCAACTTCTTTGGCAGCAAA
CTATTCCTTTATTACTATTCTTGCTTAG