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Detailed information on CNT0011077


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8L608|HPSE2_ARATH, E-value = 0.0

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0001907, E-value = 1e-07 (G. max)
CNT0022093, E-value = 1e-13 (A. trichopoda)

Expression of CNT0011077

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MPLGLGISDKSGFVSPLSGKFYSRFACSHHVIILP*

>peptide 2 (74 aa)
MGWKKIIRCYIITRRVPSDSTRWKPSKQNHALEWKTITTHRKWAHPKFVSSPCKPEVSNIGFPLVHQIHSIPQL*

>peptide 3 (35 aa)
MMWAIWSLLATRLPSRGMSCLDFQMDAYIWIDGMS*

>peptide 4 (45 aa)
MHCEGGSGPVSVSGKGIGIPATPMISYITLFPRATKYTRGNLEMS*

>peptide 5 (410 aa)
MDRWDELNSFFNKTGALVTFGLNALRGRQRTSKRVWEGNWDSSNAHDFIYYTVSKGYQIHSWEFGNELSGKGIGAKVDAEQYGEDVIHLNNLIDQLYKHF
QPRPLLLAPGGFYDKEWFETFLEVSGPGTVDALTHHIYNLGPGSDLNLVNKILNPLHLNKIADTFSNLIQTIEINGPWTSAWVGESGGAFNNGGPNVSNT
FVNSFWYLDQLGMAAIYHTKVYCRQTFIGGNYGLLDTSTFVPNPDYYSALLWHRLMGKGVLAVSNNASSYLRSYAHCTRHRAGVTLLLINLSNQTHYGVN
IESSVSITSHVKEKSNHKSSFVQRLKKTISWVGRKSSDVTLSREEYHLTPLDGNLQSRTMLLNGKPLQLTENGHIPSLSPVLVNLKSPISVSPLSIKFIV
FPNFSSPVCT*

>peptide 6 (38 aa)
MSKRNQITRVLSCNVLRKLFHGLEENHQMLHYHEKSTI*

>peptide 7 (88 aa)
MGFASFLLIFLTLCPALAQIVEDTEFLIDGTVKIAETDDNYVCATLDWWPKEKCNYNECPWGSASLINLDLSHPFLANSIQGLHVPIM*

Sequence

>CNT0011077
AAACAAAGAAGTCCTACTTGTATAACTCAGCCGTTGTTGATTTCTTTTCGGCAGTCAGCCATTACTAACGACAAACTTTAAGCTTAAAGACACCTCACAA
CTGCAAATCCAACAAATAATTTGACTCTGCTCATGCAGTTGACACCTCATTCATTACAAATTTTGTCTATATTTCCTCTTTCTCACATCAAGTGTCTGGA
ACTTTAGTTTTGTAGCAAAAATCCCTTCATTCTTGAACGAGTGTTGCTATTTAACACCCCTACAAAAAGCTCCAAACTTTAGCAGGTACACTTTGAGAAA
TCTGAAACTTACCCTTTTCATTTCACACGCTTTTCTTGTTCTTTCCCCCCACCACAAGGTACTGGCAGATAAAGCTTGCCCCTTTTTGGCACAGAGGCTG
CTGCACATTATCAGTGTTTGCTCTTCCTTTCATTTTGGAAATTGGGATCTAGTATTGTCAAATTCTTGTAGTGTTTGAGGTTATTTCTCATCTGGGTTCA
GCTCAATTTTTTCGCTTATGCCTGTGTTCAAAGAGGGGTGAAGCTGAGTAGGATAAAAGCCAATGGGCTTCGCATCCTTCTTGTTAATCTTTCTGACACT
TTGTCCTGCATTGGCACAAATAGTTGAAGATACAGAATTTTTGATTGATGGAACTGTAAAAATTGCTGAGACAGATGATAATTATGTTTGCGCTACCCTT
GACTGGTGGCCTAAAGAAAAGTGTAACTACAACGAATGCCCTTGGGGCTCGGCATCTCTGATAAATCTGGATTTGTCTCACCCCTTTCTGGCAAATTCTA
TTCAAGGTTTGCATGTTCCCATCATGTGATAATTTTACCTTAGTATTTGAGATCTTGTTGTTCTTACTTTAATTAACAAACATTGATTGGTAAACTCTAT
AACTTCACCTTAAACATCAAATGAACCATCTATTTGCAACAGTGAGAAAATTAGACTTGATGCTTCTTCAGAATGCTGATTGATTTCTCGTCTGTTCTGA
TTGCTAATTTGGTGTTGCAGCTTTCAACCATTTGAGATTACGACTTGGAGGTTCTTTGCAAAACCGAATAATATATGATGTGGGCAATTTGGAGTCTCCT
TGCCACCCGTTTACCAAGCAGGGGGATGAGTTGTTTGGATTTTCAAATGGATGCTTACATATGGATAGATGGGATGAGCTAAATAGTTTTTTCAATAAGA
CAGGAGCACTTGTGACCTTTGGCCTGAATGCATTGCGAGGGAGGCAGCGGACCAGTAAGCGTGTCTGGGAAGGGAATTGGGATTCCAGCAACGCCCATGA
TTTCATATATTACACTGTTTCCAAGGGCTACCAAATACACTCGTGGGAATTTGGAAATGAGTTGAGTGGTAAGGGTATTGGTGCAAAGGTTGATGCCGAA
CAATATGGAGAAGATGTTATACATCTTAACAATCTCATAGACCAATTGTATAAGCATTTTCAACCCCGACCACTTCTCTTAGCACCAGGAGGATTCTACG
ATAAAGAGTGGTTCGAGACGTTCCTTGAAGTGTCAGGGCCAGGCACTGTCGATGCCTTGACTCATCATATATATAATCTTGGTCCAGGATCTGACCTCAA
TCTCGTAAACAAAATTTTAAATCCTCTGCACTTAAATAAAATTGCTGATACATTCAGTAATCTTATCCAAACCATTGAAATAAATGGTCCTTGGACTTCA
GCTTGGGTTGGAGAATCTGGTGGGGCCTTCAATAACGGAGGTCCTAACGTGTCTAACACCTTTGTGAACAGTTTTTGGTACTTGGATCAGCTTGGGATGG
CAGCCATTTATCACACTAAAGTATATTGCAGGCAGACTTTTATTGGTGGAAACTATGGGCTCCTTGACACAAGTACATTTGTCCCAAATCCTGATTATTA
TAGTGCACTTCTTTGGCATCGGCTGATGGGAAAAGGAGTTCTTGCTGTTAGCAACAATGCATCATCATATCTGCGCTCATATGCCCATTGTACAAGACAT
AGAGCAGGTGTAACATTACTATTGATCAATCTAAGCAACCAAACTCATTATGGAGTCAACATCGAATCTAGTGTAAGCATCACCTCGCATGTCAAAGAGA
AATCAAATCACAAGAGTTCTTTCGTGCAACGTCTTAAGAAAACTATTTCATGGGTTGGAAGAAAATCATCAGATGTTACATTATCACGAGAAGAGTACCA
TCTGACTCCACTAGATGGAAACCTTCAAAGCAGAACCATGCTCTTGAATGGAAAACCATTACAACTCACAGAAAATGGGCACATCCCAAGTTTGTCTCCA
GTCCTTGTAAACCTGAAGTCTCCAATATCGGTTTCCCCCTTGTCCATCAAATTCATAGTATTCCCCAACTTTAGCTCTCCTGTTTGTACATAAGGATTAG
GAGATACTTGTGCCTAATAGCTATAATCTGGCACTCTATCTATTCATACCTTAGTAATTGTATAATTGCTACAATAAACTGAGCTGCAAAATTTTATACA
GTTATGTATTATATGGCTAGATAAATCCCTCCCCCTACTAGTGTTTCCAGGAACATGTATCTTGTCATGTAAGTTCTTTATCAACTCGCAGAATTAGATG
TAATTTAGCTTCCTCTTGGTGCTTTTGGATCTTTTCATGGGACAAACTAAACAGTTTATATATAGGCTGTTATTGC