« Back to Solanum tuberosum search


Detailed information on CNT0011121


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q940H7|MES12_ARATH, E-value = 2e-81

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0007372, E-value = 1e-07 (V. vinifera)
CNT0043837, E-value = 1e-07 (A. thaliana)
CNT0035294, E-value = 5e-07 (P. patens)
CNT0017680, E-value = 7e-06 (Z. mays)
CNT0002061, E-value = 5e-07 (G. max)
CNT0023427, E-value = 3e-08 (A. trichopoda)
CNT0031443, E-value = 3e-08 (O. sativa)
CNT0039778, E-value = 5e-07 (S. moellendorffii)

Expression of CNT0011121

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MGLSGKFLWRCRMQKSYIFIIMGLSGKFLWRCRMQKSNIFIYF*

>peptide 2 (31 aa)
MTEREEENNEALNSFEYFSCFYRFFLNDQMN*

>peptide 3 (94 aa)
MGNTMCMTKKEIREAGKNGIGSRSRRMERSKRRSLLEEELLHRQALSMAIQQHQLSQRFDGSISRRVGSTSSRRRNDLTDQLTNSKQVVIIVEP*

>peptide 4 (60 aa)
MELGRGVGGWRDQRGGHYWKRSCFTGKLYLWQFSSISCLKDLMGLFLGVSDPLALAVAMI*

>peptide 5 (73 aa)
MGMVKTSLLLASCSRRSKCTGCISISLLQRYFLYTSCKESSIIMLIAKLKSSPVCGNVLCSVHYSLLFEFKLL*

>peptide 6 (77 aa)
MISDGQRPFDVFAEELGSAELFTQESKFLTYGNGKDKPATGIMFEKEQMHGLYFNQSPTKVLPLYKLQGVIHYYANC*

>peptide 7 (68 aa)
MFWEINRVGRKRTVNRSTFLLCLFFSCFWLLWNIAKVILNPLFRPSPLFGDILWLQSYLWEVYLWTSH*

>peptide 8 (32 aa)
MITKKIEASICSFCLVRTNAASLSLSLSLSLW*

Sequence

>CNT0011121
CACAAACCAAATTTCAACATCACAGAGATAAAAGCAAATCAGAAGTAGAAACTCGAAAATGACAGAAAGAGAAGAAGAAAATAATGAAGCATTGAATTCG
TTTGAATATTTTAGTTGTTTTTACAGATTTTTTCTCAACGATCAAATGAATTAAAAACCCCACCTCCCTTCCACTTCCACCTACTGTTACCTCTAAAACG
CTGTCGTTTTTCAAGTACACCTGCTACTCCATTTACAGTGCCGATTTTACAGGTTTTCTGCTTCCTCCAGACAAAGTAGTTTCTGGGTCTTGTGGAATTT
TGTGGAATTTCAAGCTTTCACTGTCTAGCTTATCTGGGTTTTGTTCAAAATTGGATTTTGAGAAATGGGTAATACTATGTGCATGACGAAGAAGGAGATA
AGAGAAGCTGGGAAAAATGGAATTGGGTCGAGGAGTAGGAGGATGGAGAGATCAAAGAGGAGGTCATTATTGGAAGAGGAGTTGCTTCACAGGCAAGCTT
TATCTATGGCAATTCAGCAGCATCAGTTGTCTCAAAGATTTGATGGGTCTATTTCTAGGCGTGTCGGATCCACTAGCTCTCGCCGTCGCAATGATTTGAC
AGACCAGCTTACCAATTCCAAACAGGTAGTAATTATAGTAGAACCCTAATTTTATTTCTATTAATTTAATTATTCTCAGTCCCTTTTCCTTTACTTTATT
ATATATTCGACTAAGACATTGAATTCTATAATGGGTCTGAGTGGAAAGTTTCTTTGGAGATGCAGAATGCAGAAAAGTTACATCTTTATTATAATGGGTC
TGAGTGGAAAGTTTCTTTGGAGATGCAGAATGCAGAAAAGTAACATCTTTATTTATTTTTAGTTTGGTGGTGGATATGAATATGATAGTTTTCTTAAAGA
TTCGTGATACTGCTGAAGTGCTCCTGAAAAGGAAATAAGTCAAAAGGTACTTTTGTTGCAAAAAAAGTGAAAAGTTTTGATCCCCCTCCCCCTTTTGGCC
TTTTCTCCCCATTTGGTTTATTCAGCTAAGATTCATTATTAGACTGTTGATTATAGACTTAAAATACGAGTCTTTTGCTTTTCGGGTTTGGATGAAATAT
GTTTTGGGAAATTAACAGGGTTGGACGGAAAAGAACAGTAAATAGATCCACCTTTCTCCTTTGTTTATTTTTTTCTTGTTTTTGGTTATTGTGGAATATT
GCCAAAGTGATTTTGAATCCCTTATTTAGGCCCTCCCCTTTGTTTGGCGATATCTTGTGGCTGCAATCATATTTGTGGGAAGTATACCTTTGGACTTCTC
ACTAGCTTTAAGTACTCATGCTTTGGATGTAGAGTGATATAACACGGAAAGGAAGCTATTTGTTTAAATATTTAGCTCAAGCTAAATAACAGAGTGATTG
AAAAAGTTTAAATCCATCTAAGTGACTGTTAATTGCCTAATCAGTGGAAGTATTTTGAAAAGAAAGATGTAGAAATTAAAAGGTTGCCGGTAACATGCTA
CTTAATGAAGAAAAGGAGACACTGGAAATCCAATAACCATTAATATCTTTTTGGCTAACTCTAGAAAATTTTCATGTGGCACTGCAATTACCTTACGAAA
TTTATGCTGTAAAGTTACCAGAATTTTTGGAGAACATCAAAACAAAGAAAATTGTTTTGATACATGGAGAAGGATTTGGAGCTTGGTGTTGGTACAAAAC
TATTGCTCTGTTGGAGGAAACAGGATTGGTCCCCACAGCCTTAGATCTCACTGGATCTGGCATTGATTTGACAAATACAAATAATGTTACATCTCTAGAG
GCATACTCAAAACCATTAATTATTTATCTGGAGAACTTGCCAGAGGATGAAAAGGTAATTTTGGTCGGTCACAGTGCTGGAGGTGCTTGTGTTTCCTTTG
CCTTAGAGCATTTCCCAACTAAAATTGCAAAAGCAGTATTTCTTTGTGCCACGATGATATCTGATGGTCAGAGGCCTTTTGATGTGTTTGCTGAAGAGCT
TGGGTCTGCAGAGCTTTTCACCCAGGAGTCTAAGTTCTTAACTTATGGGAATGGTAAAGACAAGCCTGCTACTGGCATCATGTTCGAGAAGGAGCAAATG
CACGGGCTGTATTTCAATCAGTCTCCTACAAAGGTACTTCCTTTATACAAGTTGCAAGGAGTCATCCATTATTATGCTAATTGCTAAACTAAAATCATCC
CCAGTGTGTGGAAATGTGCTTTGTAGTGTGCATTATTCTCTGCTGTTTGAATTTAAATTACTGTAGAAACTAGAAATGATTACAAAAAAAATAGAGGCAT
CAATATGCAGCTTCTGCTTGGTCAGAACAAATGCAGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGGTAGTGGGAGTGGCAGTATGATGAAAAACT
TCTCACGATGACATATGTTTCTCACGCCATATACATCACCTAAAGGCAAGAGGCAACAGAATGGAACAACAATATAAATGTCAGTTCTGGTTGCACTTAT
ACATGAATTTGGATCATGCTTTTTGAGTTAACAAGTTCAGTAGAAAGTAATGTTGGCCCTGTACCTGCTTTGAATCTACAATTTTGGAATTGGAAATGAT
TATTTACACCACAACTGAAAAAGAAGAAGAAAGATGAACAGTAAGACCTCCATATACT