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Detailed information on CNT0011130


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0021866, E-value = 6e-39 (A. trichopoda)
CNT0032285, E-value = 2e-23 (O. sativa)

Expression of CNT0011130

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MLMNLILCNMERVEYKTLAITFEHHFFFLSMVQHIW*

>peptide 2 (49 aa)
MIEKFTRILMRNQAGAVIHVCLLVQRTLSLTLYSPYIMIWCMDGDWILH*

>peptide 3 (379 aa)
MTTLYRSGTFRRTNDSSRLVITSIIGMVLGYFIGISSPYVSLTKISLPSNLVSSLAFGDDHRRPSIERFFPEHLVTPQIYVPTNPRGAESLPPRIVVPES
DFYLRRLWGEPSKDLIKKPKYLVTFTVGLNQKDNIDAAAKKFSEDFQILLFHYDGRTSEWDEFEWSKRAVHISVRKQTKWWYAKRFLHPDVVAAYDYIFI
WDEDLGVENFNAEKYALFPGCLSWYIRLVKRHGLEISQPGLEPNSGLTWQMTKRRDDREVHKNTDEKPGWCSNPRLPPCAAYSLTHSLLPVYNDLVHGWG
LDFALRRCVEPAHEKIGVVDSQWIVHQFVPSLGSQGETENGKAPWEGVRERCTNEWAMFQDRLANADESYFVQHGKSRI*

>peptide 4 (55 aa)
MQLLKSFQRTFKFCFSIMMVEQVSGMSLSGPSVQFISVLGSRPNGGMQRDFYILM*

>peptide 5 (29 aa)
LGIAHISPMINRFSPSGMTRFLILESVGC*

>peptide 6 (33 aa)
MITYLYGMKILELRTSMQRSTRYSLDVLVGILD*

Sequence

>CNT0011130
CTGGGAATAGCTCACATTTCCCCAATGATTAACAGATTCAGCCCTTCTGGCATGACAAGATTTCTTATTCTAGAAAGTGTAGGATGCTGAAGATGCTCAA
GGAATTTGTTTATGGTTAGTGCTAACTGCTAACCTTTGGATTACGCAACTTTTATCACAATGACAACCTTGTACCGCAGTGGGACTTTCAGAAGAACGAA
CGATAGCTCCAGACTAGTTATAACGTCAATTATAGGAATGGTTTTAGGATATTTTATTGGCATTTCATCTCCATATGTTTCTCTAACAAAGATTAGTTTA
CCTTCAAATCTTGTATCATCTCTAGCGTTTGGCGATGACCATCGTAGACCTTCTATTGAACGCTTTTTTCCAGAGCATCTTGTAACTCCACAGATATATG
TTCCAACAAATCCTCGCGGTGCAGAGTCCTTGCCACCACGGATTGTGGTCCCTGAATCAGATTTTTATCTGAGAAGGTTGTGGGGTGAACCAAGTAAGGA
TCTAATAAAGAAGCCAAAGTACTTGGTGACATTTACTGTTGGTTTGAACCAAAAGGACAACATTGATGCAGCTGCTAAAAAGTTTTCAGAGGACTTTCAA
ATTTTGCTTTTCCATTATGATGGTCGAACAAGTGAGTGGGATGAGTTTGAGTGGTCCAAGCGTGCAGTTCATATCAGTGTTAGGAAGCAGACCAAATGGT
GGTATGCAAAGAGATTTTTACATCCTGATGTAGTAGCTGCCTATGATTACATATTTATATGGGATGAAGATCTTGGAGTTGAGAACTTCAATGCAGAGAA
GTACGCGCTATTCCCTGGATGTCTTAGTTGGTATATTAGACTAGTTAAAAGACATGGTCTTGAGATTTCTCAGCCTGGTCTTGAACCCAACAGTGGACTG
ACATGGCAAATGACTAAGAGGAGGGATGATAGAGAAGTTCACAAGAATACTGATGAGAAACCAGGCTGGTGCAGTAATCCACGTTTGCCTCCTTGTGCAG
CGTACTCTCTCACTCACTCTCTACTCCCCGTATATAATGATTTGGTGCATGGATGGGGATTGGATTTTGCATTGAGAAGATGTGTAGAGCCTGCTCATGA
AAAAATTGGCGTTGTTGATTCGCAGTGGATAGTACATCAATTTGTTCCTTCTCTTGGGAGTCAGGGTGAGACTGAGAATGGCAAAGCTCCTTGGGAAGGG
GTAAGAGAGAGGTGTACAAATGAGTGGGCTATGTTTCAAGATCGTTTAGCCAATGCTGATGAATCTTATTTTGTGCAACATGGAAAGAGTAGAATATAAA
ACTCTTGCAATTACTTTCGAACATCACTTTTTTTTTCTTTCTATGGTGCAACATATTTGGTAATACGCATTACTAGTTCCCTCGTTAAAAAGTTTACCAA
GAAACATTAATGGGACATTTTTTGTTAAG