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Detailed information on CNT0011351


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0044292, E-value = 8e-07 (A. thaliana)
CNT0002396, E-value = 2e-07 (G. max)

Expression of CNT0011351

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (105 aa)
MLSCTRSIPSRKCFNSTRKPVSNILSDWITELKHFCQVSINDKLAEAAVTLFNFSMRSSHIIFMKHLRKSEVPARGRKLIIHEARKTCSRLYNMQNLEQE
LIDRI*

>peptide 2 (50 aa)
TTSLDEVISSEVLCLEYSPCFPVPEAFLLENASTAPENLSLISCPTGLQN*

>peptide 3 (62 aa)
MQLQKVKSVIFENIHYFYSAIIPDVLPGLSADGPAFSPALPPGSWKQENALVSFIITKKSEK*

Sequence

>CNT0011351
TACCACATCTTTAGATGAAGTCATATCCTCTGAAGTCTTGTGTCTGGAGTACTCCCCATGCTTTCCTGTACCAGAAGCATTCCTTCTAGAAAATGCTTCA
ACAGCACCAGAAAACCTGTCTCTAATATCTTGTCCGACTGGATTACAGAATTAAAACATTTTTGTCAAGTGTCAATCAATGATAAATTGGCAGAAGCAGC
AGTAACATTGTTCAACTTTAGCATGAGAAGCTCACATATAATATTCATGAAGCATCTCAGAAAATCAGAAGTTCCAGCAAGGGGCAGAAAACTTATAATT
CATGAAGCAAGGAAGACATGTTCCAGGTTATACAATATGCAAAATCTAGAACAAGAACTCATAGATAGGATATAGTTTCTGAACCTTGTCTTGATGAAAT
AAGAGTTAAAAGGTTAAAAACACACCTAACGTATCCCGGTTTTTCGAATTTCATACTTGAACTATCAGGTGTGCGAGTTTCCTACCTGAACTATCACCAA
CTATTTATCAAAACACATCTCAACTATCAGATTTTCCTTTTTCCTACCTGAAACATCACCATCGTTTAGGGAGGAAAACGGAGCAATTGATAGTTGAGGT
GTGTTTTAATAAATGGTAGGTGGTAGTTCAGGTAGGAAACTTGTGTGAGCACACCTAATAGTTCAGGTATGAAACTCGAAAAAACGGAATACTCTTAGGT
GTGTTTTTGACTCCACTCACGAAATAACTAAAGACCAAAAGGAACTAACCAACCTATTGAGATTCATCTTTAATTAATTAATGCAACTACAAAAAGTAAA
GAGTGTAATTTTTGAGAATATCCACTACTTCTATTCAGCTATAATACCTGATGTCCTTCCTGGTCTTTCAGCAGATGGCCCAGCATTTAGTCCGGCACTT
CCACCAGGAAGCTGGAAGCAAGAAAATGCACTAGTATCGTTCATAATAACCAAGAAGAGTGAAAAGTAATAATACAAAGGAATGTTTGAAAAGAACTAAC
TCGTCCTCTAGAACTGGCACCGATCTGAGGGTACTTCAAAATGGTCCAATCAAAAACATAGTCAAATTGATAACCTGTGTAATGTCAAAGATTAAG

lncRNA-RNA interactions

Number of interactions: 9

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
PGSC0003DMT400026690 Casein kinase protein coding CNT0011351 215 237 CDS Trans
PGSC0003DMT400026691 Casein kinase protein coding CNT0011351 215 237 CDS_UTR Trans
PGSC0003DMT400026692 Casein kinase protein coding CNT0011351 215 237 CDS Trans
PGSC0003DMT400051695 Casein kinase protein coding CNT0011351 225 246 CDS Trans
PGSC0003DMT400051695 Casein kinase protein coding CNT0011351 266 159 CDS Trans
PGSC0003DMT400051696 Casein kinase protein coding CNT0011351 225 246 CDS Trans
PGSC0003DMT400051696 Casein kinase protein coding CNT0011351 266 159 CDS Trans
PGSC0003DMT400065568 Casein kinase protein coding CNT0011351 1366 499 CDS Cis
PGSC0003DMT400065568 Casein kinase protein coding CNT0011351 1060 387 CDS Cis