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Detailed information on CNT0012080


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q0DKP3|TIR1A_ORYSJ, E-value = 4e-08

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0007372, E-value = 1e-16 (V. vinifera)
CNT0042889, E-value = 1e-07 (A. thaliana)
CNT0034328, E-value = 2e-12 (P. patens)
CNT0002061, E-value = 2e-06 (G. max)
CNT0022663, E-value = 2e-09 (A. trichopoda)
CNT0026361, E-value = 3e-08 (O. sativa)
CNT0039778, E-value = 4e-07 (S. moellendorffii)

Expression of CNT0012080

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MHLMLVLGPFATIQAIATTLSLSGLLADHVFKYIGVHPNKLEMFSLTFAGDRNIGLHYVLSGLVWLIQLPLFSI*

>peptide 2 (34 aa)
FICSFIPCSWKQHFSAGVSYLLEVEVRSAYTLSS*

>peptide 3 (39 aa)
MPLYPLCSSPESRSFIHLRVEKIKRLEDYIFTHILTSIF*

>peptide 4 (38 aa)
MSSRLLLIKCQKPKSIFCVFCSPILVLAKLQITHINPW*

>peptide 5 (34 aa)
MKEYQHIYYVYCTRDNQPSNVTKNSRSRKNAHIF*

>peptide 6 (36 aa)
MIHIKPIRKLVTLTLESILQQKIHECKKLSRDTTCR*

>peptide 7 (30 aa)
MLKMFEITTTISKCLYIPFVLLQNQDLLYT*

>peptide 8 (51 aa)
MLCIPERDKWTTEKIVIVDQMHNVFCCKFKINISLQTKSSKKLPYGYNLIV*

>peptide 9 (40 aa)
MSSRLLLIKCQKPKSFFCVFCSPILVLAPEIRIKTDSLFV*

Sequence

>CNT0012080
TTTATTTGTAGCTTCATACCATGTAGTTGGAAACAACATTTCTCAGCTGGTGTCTCCTACCTACTCGAGGTAGAGGTAAGGTCTGCGTACACTCTATCAT
CATAAACCCCCTTTTCAGATCCATACCAGGTAAATGATACATATAAAACCCATTAGAAAATTAGTTACCTTAACCCTAGAATCTATTTTGCAGCAGAAAA
TACATGAATGCAAAAAGTTATCTAGGGATACAACATGTAGATAGTCTTTAGTTAAAATGCCAAACGTTGATGGCATCAGATATCTGTAAAAAGTCATTAC
ATTAGCCAGAAATAGATTTTAGTATTTCAAAGAATATATATATATTCATAACCGAAAGCACCAAGGTGTTACAATATACAAATTAAAACAGACAGACGCA
TTATTGAAAGAGCAAGGGAGAAAGAGCGTCTTTACCAGCAAGGAAAAACGACATTTAAAGCCTGAAGCAACACTCTTTCTCCCTCTTTCAGTGATGCAAA
TCACAAAGTTTGAAAGAGATGTCAAAAAGTTTAATGGCCAATAAGATAGGCCCAGGCAACACACCAGAATAGAACAAACACGCACCAGAAATAAGGATCA
ACACAGATTCTCTATTTGTATGAATGTCATCGAGATTGCTCCTAATAAAATGTCAAAAGCCTAAGTCATTTTTTTGTGTGTTCTGTTCACCCATTTTAGT
ACTTGCCCCAGAAATAAGGATCAAGACAGATTCTCTATTTGTATGAATGTCATCGAGATTGCTCCTAATAAAATGTCAAAAGCCTAAGTCTATTTTTTGT
GTGTTCTGTTCACCCATTTTAGTACTTGCAAAGCTTCAAATTACACACATTAACCCTTGGTAACTTCTGATCCATAAATTACTGAACAACAAGGCATCTA
AAGATATCCTACCGTCTCCAGCTTTTGCAACATTGACCAACAGAGACTCGTTGCTGAAGGGGCAGTCTCTTCTCTCCAGATTACAAAGGCTTACACAACT
GGAGGAATACGTAGTGGAGGCGTGAATGGGGAAGTCGTCACAATTGCCTGCAATGGTGAATGATGGCCCCAAAACCAGTGTCAAGCAGTCCAAGGGTTAG
GTAATCAGGGTTGTCACATTCAGATGCAAAGATCAAAGCTTTTTTGCACCTCTAAGGACACAAGTACTCAGAAAAGGGTAATCTACAAAGAAAAATGCAA
AATTTAACATGAGATATTCTCAATTTTTTTTACAAATGCAGTTACTGTATTGATTCATTTGCAATATATGCACTTGATGCTGGTTTTGGGGCCATTTGCA
ACAATACAAGCAATTGCAACGACTCTCTCTCTTTCTGGCCTCCTTGCAGATCATGTTTTCAAGTACATCGGTGTCCATCCTAACAAGTTAGAGATGTTTT
CCTTAACTTTTGCGGGGGATAGAAACATAGGCCTCCACTACGTGCTCTCTGGTCTAGTTTGGCTTATACAACTACCCTTATTTTCCATTTGAAAGACAAA
TAAGCACACATGTTAAAATTTATTGAAGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATAACAACAACATGAAAGAATATCAACAT
ATATATTATGTCTATTGCACAAGGGATAATCAGCCAAGCAATGTAACCAAGAACTCGAGAAGCAGGAAGAATGCACACATATTCTAGACAGTTTGGTCAG
CAGAGACTTCGCATCAGATTTTTGAACCTACATGTTGAAAATGTTTGAAATCACCACAACAATATCGAAATGCCTCTATATCCCCTTTGTTCTTCTCCAG
AATCAAGATCTTTTATACACTTGAGAGTTGAAAAAATCAAAAGGCTTGAGGATTATATTTTCACACATATTTTGACATCTATTTTTTAACATATAGCTAA
TTTTAATTTAAAAATACAAAACAACATGTGATAAAGTTGTTTTTCATTGCTTTTAAAGGCAAAAAAAATAATTAAAGTGCTGACAGGTAAAGCTATTTTC
AACAACCAAACAATTCATTTTTATCCCTTTTAGTTATGGAAGCTATTAAAGCAATTCTAGATAGATTTGAGTTCTCAGTAATGAATTTGCAGGTTAAGAG
CTTCATATAGCTGACATCATTCCATACCCCATATATGTTATGTATTCCTGAAAGAGACAAATGGACAACCGAAAAGATAGTAATAGTTGATCAAATGCAT
AATGTCTTCTGTTGCAAATTCAAGATAAATATCAGTCTTCAGACAAAGAGTAGTAAAAAATTACCCTATGGATATAACTTAATAGTTTAACCTATTTTAG
CATGCTAATAACCTTATTTTCCAGGTTACAAACTTAATGTTACCTTAATGGCTCAAAAACTATTTTCACCATTGGTGTATATAGATTGAATTCTTGAATA
ATAGGATCATTTGGTCAGTACTAATTCATGTATCCATAGAGAGTGTTTTACATTTCATTAAAGTCATCTAATTATGTGACAGACCACACATCTATAGCA

lncRNA-RNA interactions

Number of interactions: 8

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
PGSC0003DMT400037417 Gene of unknown function protein coding CNT0012080 1540 596 UTR3 Trans
PGSC0003DMT400037420 Gene of unknown function protein coding CNT0012080 1540 596 UTR3 Trans
PGSC0003DMT400037421 Gene of unknown function protein coding CNT0012080 916 393 UTR3 Trans
PGSC0003DMT400038319 Gene of unknown function protein coding CNT0012080 1413 608 UTR3 Trans
PGSC0003DMT400038320 Gene of unknown function protein coding CNT0012080 1413 608 UTR3 Trans
PGSC0003DMT400038321 Gene of unknown function protein coding CNT0012080 1413 608 UTR3 Trans
PGSC0003DMT400038322 Gene of unknown function protein coding CNT0012080 1413 608 UTR3 Trans
PGSC0003DMT400072141 Transport inhibitor response 1 protein coding CNT0012080 110 87 CDS Trans