CANTATAdb - search

Detailed information on CNT0001229

BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005526, E-value = 2e-07 (V. vinifera)

Expression of CNT0001229

Sequence

>CNT0001229
GAAACGATTCATGGGTATGCGTTCCTTTAGAAGCTCGTTTAGTGCATCCAATGATTCCTGAGTATAAGAAATACTGATTAGAGAATCAGACTATAAGTAA
AATTATACTTCATTTCCATACTGGACTGACCTGAGATAAAAGTAAGAATGGATAACCGTCAGAGAAATAGGTCCGATGCTGTCCTCGAACATAATCAGGA
TCCACTTGTCTAACTTCTGAAGCTTCATTTGGAAA

lncRNA-RNA interactions

Number of interactions: 2

Potential function	Interacting transcript	Gene description	Transcript biotype	lncRNA id	Alignment score (LAST)	Alignment length	Transcript region involved in interaction	Genomic orientation of interacting RNAs
	GLYMA09G05520.1	Uncharacterized protein	protein coding	CNT0001229	613	224	CDS	Cis
	GLYMA09G05530.1	Uncharacterized protein	protein coding	CNT0001229	175	234	CDS	Trans