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Detailed information on CNT0000126


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005926, E-value = 5e-20 (V. vinifera)
CNT0043564, E-value = 2e-19 (A. thaliana)
CNT0035158, E-value = 5e-11 (P. patens)
CNT0021574, E-value = 2e-22 (Z. mays)
CNT0022384, E-value = 1e-17 (A. trichopoda)
CNT0027330, E-value = 6e-32 (O. sativa)
CNT0008938, E-value = 1e-11 (S. tuberosum)

Expression of CNT0000126

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MMSQLMNLTMGISKLVPVLLCKLAFQRMTQIHL*

Sequence

>CNT0000126
CTTAAAGCACGTTAAAAGAAGAAAATAGAGAAAAAGAATCAAAAGATGATGACATTCCCTTGCGGCTTTGCGCCTACATTTATTGGACCCCACCGATAGC
ATGATGAATCTTTGGGTCACTGTCGCTATCCACCTTTAAAATAATCCGAACCTAATAAAATAAAAAAGAGAAACAAAATAATAAACCCTTTTTTCACTCT
CTCTCTCTCTCTCTTTTTTTTTTTTTCTTTTATTCATTCCCCTCACACCTCACTAGCTCAATTCCTCGCCGAGTTTTTATTGTTGCGACGTGGCAATCGG
AATGCTGCCGCCGATTCAAAGCGTCTCCGCCGGTGATCTCCGTTGCTGATTCTCCGACACCGCTTTTGCGAAGTGGATGATGAGTCAGTTGATGAATTTG
ACAATGGGAATCTCAAAACTTGTTCCTGTGCTATTATGTAAATTGGCATTCCAAAGGATGACACAGATCCATTTATGAGGCGCCAAGTTGTTGATTGCTA
ACATATTCCATCACTCAGCTTGAGGAAAAGGAGCAGATATTTTTCAGTCTAGTGGAGATTTATACACCATTTCTTGCCTGAGCGATAATTTGTGTCTATA
AATGCTTGCCGTGGCCTTCAATTTTGTTCTGCTTTTCATAAATTTTTGTATAATCTTTGTCGTGTGAATTCTTTGGCTTTTGATTCATGATTTTCATGCT
TTTCTAGGTTCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCAAACATAGTTCTAGTTTTAT
GCTCTGGCGTTATCTAGAAGAAAGAAATACAGATGTAATATTTTGTAAAGAATCAGTGCTGTCTTGACAGGGAAAGTGAACCTTTGATGCTAGCTTGGAA
TTAACTTATGCTTTATTTTAGAGCAATCTAGATTATTTTATTCATTACTTTTGGTGTGTGTGTTTGGGTGTTGAGGGGGAGCAAACCAAGCATATGTGCC
TCTGTGCACAAGAGGAAAATATTAGCACTCTGACTCTATCTTGTCTA

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA02G01980.1 Uncharacterized protein protein coding CNT0000126 138 89 CDS Trans