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Detailed information on CNT0012829


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0030024, E-value = 1e-06 (O. sativa)
CNT0035638, E-value = 6e-06 (C. reinhardtii)

Expression of CNT0012829

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MIFLLENSEIQRKEEPWKIFQRYLINGLYLP

>peptide 2 (36 aa)
MRLHLQYNWKIFQKTVHFTHNYMHICLISKVILLRL*

Sequence

>CNT0012829
AAAACACACACACTCTCTCTCTCTCTCTCAATAGCTCTTCGTTTGTAAGGTTTGAAGTTCCCGGATTTTGGCCGTAAGTAAATACAATTTGTATAATTCA
CTCATAGGTCTTGGAGTTGGCCACCTTTATAAGGATGGACCCTCCTTTGGTAACCAAGGGCAGAGGCAGGGGAAATAACACAAGAGGAAGGTAAAGATCA
TCCCCAGGATCGTCATACGGATCCTCTTCTAGCTCCTCAGTTATACAAAGAGGAAGATTGAGTTTAATAAACTCAAAAATCTCCAAAAATGAGGCTTCAT
CTTCAGTACAACTGGAAGATATTCCAGAAAACAGTCCATTTTACGCATAACTACATGCATATTTGTCTGATAAGCAAAGTGATACTTTTGCGTCTATAGC
TAAAGAAGATATTGATAATATCAAATCTTATGAAAAGTTGTCAAAGAATGGAATGATATTTCTTTTGGAAAACTCTGAAATTCAGAGAAAAGAAGAACCC
TGGAAGATATTCCAGCGGTACCTAATCAACGGATTATATTTGCCG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
PGSC0003DMT400093566 Conserved gene of unknown function protein coding CNT0012829 692 366 CDS Trans
PGSC0003DMT400094480 Conserved gene of unknown function protein coding CNT0012829 596 425 CDS Trans