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Detailed information on CNT0013655


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P17642|PRS2_SOLTU, E-value = 1e-27

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0007500, E-value = 4e-10 (V. vinifera)
CNT0042480, E-value = 1e-06 (A. thaliana)
CNT0033765, E-value = 4e-10 (P. patens)
CNT0002430, E-value = 9e-08 (G. max)
CNT0023393, E-value = 1e-09 (A. trichopoda)
CNT0029253, E-value = 9e-11 (O. sativa)

Expression of CNT0013655

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MTYIAIGKNTHKKKKKKKKKKKKKKKKKKKKKLKLKPLGATLQLRYVHV*

>peptide 2 (40 aa)
FIIFMRLNPDRVQKFKKLSLVHHIIYIEHHILCLVQTFHK*

Sequence

>CNT0013655
GATTTATTATCTTCATGAGATTAAATCCCGATCGAGTTCAAAAGTTTAAGAAATTAAGCCTTGTGCATCATATCATATATATTGAACACCACATTTTATG
TTTGGTACAAACTTTTCATAAGTAAAGCTTGTCTATCTTATTCAAAGTTCTTTCCATGACATATATAGCAATTGGAAAGAACACACACAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTAAAACTCAAACCCCTTGGTGCAACTCTTCAACTCAGGTACGTGCATG
TCTGATTCTTTTTTCATCACTTAGCGTAGACAGAAGGATTAGTGAGGAGGTACGCTTCGATGGCCTTGAATAGGTCAATGGCTTTCCCTTTGCCTACATT
GTGTTCTTCTTCACTAACAACATAATCACCTTTTGTGTGATACGTAGTTGTTGTCTTGCAAACACAACCTCCATCTCCAGCAGCTTCAAATTTGACATCA
TAGGTAATTGATTCCAATTTGTC

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
PGSC0003DMT400003777 Ribonucleoprotein, chloroplast protein coding CNT0013655 1008 453 CDS Cis