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Detailed information on CNT0001582


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q5M757|ZDH15_ARATH, E-value = 2e-76

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0021956, E-value = 7e-08 (A. trichopoda)
CNT0009014, E-value = 7e-14 (S. tuberosum)

Expression of CNT0001582

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MHASLLLSNTTSVEVHEKKKGVRWMYDLGWKRNFEQVFGTKKALWLFPLFSKEDLDNIPALRGIEFPTRSDVDV*

>peptide 2 (54 aa)
MFDSDCFDYSYNLRTCDLKGTKCRFAFEEQNSFQVFDLSIIALFRGNAVYMVCM*

>peptide 3 (229 aa)
MRGEKEGVVAWDIWKRLFPARRSRSGWLPNIRMGNNINLFKLCSGLRVLGYLMILLFGAIVALTYYAVVFITWGPLLFFSSPLRIPSFFILLLFHTLLLL
LTWSYLMVLLNDPGPVPLNWIHLGSDSDPTSSPSYCSRCQNGKPPRCHHCSICQRCVLKMDHHCIWVVNCVGARNYKYFLLFLLYTFLETVLDCLALVPS
FIRFFAGSNNHSLSPGGFAVIFLASNCVP*

>peptide 4 (54 aa)
MGSLLVATTALFAKGAFSRWTIIASGSSIVLGHVTTSTFSSSCSIHSSRLSWIA*

>peptide 5 (102 aa)
MGPSPLLQLPSPHPLLLHPPPLPHPPPPLNLVLPHGPSQRSRPRSSQLDPSWLRFGSNILPLLLFSLPEWEASSLPPLLYLPKVRSQDGPSLHLGRQLCW
GT*

>peptide 6 (39 aa)
MKRKKELGGCTTWAGRGILSRFLALRRPYGCFHCFQKRI*

Sequence

>CNT0001582
GCGTGATTGTGATATGAGGAAGTTGATAAATTTATAGAAAAGAGAAGAGTAGGTATTAGTATTTTGGTGGTTCCATGGATCTCTGAGACGGTGATGAGAG
GAGAGAAGGAGGGCGTCGTGGCTTGGGATATTTGGAAGCGCTTATTCCCGGCACGAAGAAGCAGGTCGGGTTGGCTCCCAAACATAAGAATGGGAAACAA
CATAAACCTGTTTAAGCTCTGCTCTGGCCTCAGAGTCCTTGGCTACTTGATGATCCTCTTGTTCGGTGCTATTGTTGCCCTAACTTACTACGCCGTCGTT
TTCATCACATGGGGCCCTCTCCTCTTCTTCAGCTCCCCTCTCCGCATCCCCTCCTTCTTCATCCTCCTCCTCTTCCACACCCTCCTCCTCCTCTTAACTT
GGTCCTACCTCATGGTCCTTCTCAACGATCCCGGCCCCGTTCCTCTCAATTGGATCCATCTTGGCTCCGATTCGGATCCAACATCCTCCCCCTCTTATTG
TTCTCGTTGCCAGAATGGGAAGCCTCCTCGTTGCCACCACTGCTCTATTTGCCAAAGGTGCGTTCTCAAGATGGACCATCATTGCATCTGGGTCGTCAAT
TGTGTTGGGGCACGTAACTACAAGTACTTTCTCCTCTTCTTGCTCTATACATTCCTCGAGACTGTCCTGGATTGCCTAGCTCTGGTTCCTAGTTTTATCA
GGTTCTTTGCTGGATCCAACAATCATTCTTTGTCTCCTGGGGGCTTTGCAGTCATCTTTTTGGCTTCTAATTGTGTGCCTTGATGCAGTTCTTAATTTAG
CCTTCGCCCTCAGTCTTCTTTGTTTCGTTGTCATGCATGCATCTCTTCTGTTAAGCAACACAACTTCAGTTGAGGTTCATGAAAAGAAAAAAGGAGTTAG
GTGGATGTACGACCTGGGCTGGAAGAGGAATTTTGAGCAGGTTTTTGGCACTAAGAAGGCCCTATGGTTGTTTCCATTGTTTTCAAAAGAGGATTTAGAC
AACATACCTGCACTAAGGGGCATTGAGTTCCCTACACGTTCGGATGTTGATGTATGAAAGCTGGGTAGCTTATAGGTTTGAACATTTTTTTCATTAAATG
ATGTCATTTATGCTTACTTCATGACAGTGCAGCGTAGGGCATGAAAGTAATACTCTACTTGATTGCTGATGTTTTAAATTATAGAATTGTCCAGTAGATG
TATATATGTAATGTTCGATTCAGATTGTTTTGATTATTCTTATAATCTAAGAACCTGTGATCTTAAGGGGACTAAATGTAGATTTGCTTTCGAAGAACAA
AATTCATTCCAAGTGTTTGACCTGTCGATTATTGCACTGTTCCGGGGAAATGCGGTTTACATGGTTTGTATGTGAACTTGATTGATTGAAGTGGAACTTG
CATTTTTATCTGATTTCTTTTGTTGTACTCGTTGACATTCGTTGTAAAAGTAATTTAAGAGTTCATCCTAATATTATACTTGTGATGGTATTGCGAAGT