« Back to Solanum tuberosum search


Detailed information on CNT0015823


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P85524|KIRO_ACTDE, E-value = 6e-14

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0003878, E-value = 2e-10 (V. vinifera)
CNT0043564, E-value = 6e-08 (A. thaliana)
CNT0034233, E-value = 2e-10 (P. patens)
CNT0019093, E-value = 4e-09 (Z. mays)
CNT0002977, E-value = 1e-08 (G. max)
CNT0022384, E-value = 1e-08 (A. trichopoda)
CNT0027503, E-value = 2e-11 (O. sativa)

Expression of CNT0015823

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MAHSHIYTDAKCVYIYIYIYIYVCLHTYMCVFVCDTG

>peptide 2 (28 aa)
MQSVYIYIYIYIYMYVYTHICVFLCVILA

>peptide 3 (68 aa)
QTKSITWKVIGGDLLELYNFFTIITSCDHQWTTWMFLYEKKTEDTPEPLVLLAYVLHVTKEIENHLLK*

Sequence

>CNT0015823
TCAAACTAAATCAATCACTTGGAAAGTGATTGGTGGGGATCTGTTAGAGTTGTACAATTTCTTCACTATTATCACATCATGTGACCACCAATGGACTACA
TGGATGTTTTTGTACGAGAAGAAAACTGAAGACACACCAGAGCCTCTCGTTCTCCTGGCTTATGTCCTTCATGTGACAAAAGAAATCGAGAATCACCTTC
TTAAGTAATAAAACATCGATGCTATTCAATGGCTCATAGCCATATTTATACAGATGCAAAGTGTGTATATATATATATATATATATATATATATGTATGT
TTACACACATATATGTGTGTTTTTGTGTGTGATACTGGCT