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Detailed information on CNT0015837


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P85524|KIRO_ACTDE, E-value = 5e-34

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005582, E-value = 2e-09 (V. vinifera)
CNT0042563, E-value = 5e-10 (A. thaliana)
CNT0034328, E-value = 6e-16 (P. patens)
CNT0019093, E-value = 5e-07 (Z. mays)
CNT0002983, E-value = 8e-06 (G. max)
CNT0022384, E-value = 8e-06 (A. trichopoda)
CNT0032380, E-value = 9e-18 (O. sativa)
CNT0036997, E-value = 8e-06 (C. reinhardtii)

Expression of CNT0015837

Peptides detected in this lncRNA

>peptide 1 (30 aa)
INTITCNHFITTFFSKSFVILKIIIIYIWV*

>peptide 2 (146 aa)
MGVKGKLIASVEVKCGGHLVHDIFHTKTHHISNISPSKVKSFEIHEGETVDVGSIVEWTYNDDGKDKTCKQVIEAVDHETKTITWKVIGGDLLELYDSFT
IISSCDHLWTTWTFLYEKKTEDTPEPLVFLAFVFHVTKEIENHLLK*

>peptide 3 (33 aa)
MAHSHMYTYAKYIYIYIYICVCVCVFLCVILAS*

Sequence

>CNT0015837
ATAAACACTATAACTTGTAATCATTTTATCACCACTTTCTTTTCAAAATCTTTTGTTATACTTAAAATAATAATAATATATATATGGGTGTGAAAGGCAA
GTTGATTGCTTCAGTAGAAGTGAAGTGTGGAGGACACTTGGTTCATGATATTTTTCACACCAAAACTCATCACATATCCAACATAAGCCCTAGCAAGGTC
AAAAGTTTTGAGATTCATGAAGGTGAAACTGTAGATGTTGGTTCAATTGTTGAATGGACATATAACGATGATGGAAAAGATAAGACTTGCAAGCAAGTGA
TTGAAGCCGTCGATCATGAAACTAAAACAATCACTTGGAAAGTGATTGGTGGAGATCTGTTAGAGCTGTACGATTCCTTCACTATTATTTCATCATGTGA
TCATCTTTGGACTACATGGACATTTTTGTACGAGAAGAAAACTGAAGACACACCAGAACCTCTCGTTTTCCTGGCTTTTGTCTTTCATGTGACAAAAGAA
ATCGAGAATCACCTTCTTAAGTAATAAAACATCTATGTTATTCAATGGCTCATAGCCATATGTATACATATGCAAAGTATATATATATATATATATATAT
ATGTGTGTGTGTGTGTGTGTTTTTGTGTGTGATACTGGCTAGCTAGTTCTATCTAGCTAGCTATAGTGTGTGAAATAAATAACATTGTGTTTAAAGAATA
TATTTCTTGCTCCTTCTGTCCCAAT