Detailed information on CNT0016572


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9M9L0|APC11_ARATH, E-value = 2e-57

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0007009, E-value = 6e-57 (V. vinifera)
CNT0042380, E-value = 1e-48 (A. thaliana)
CNT0001132, E-value = 1e-39 (G. max)
CNT0022405, E-value = 6e-29 (A. trichopoda)

Expression of CNT0016572

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQSAQAHCPMCRREWQFKE*

>peptide 2 (31 aa)
PLVFRHFQSWYKTLNQEISVQNFKFLAEAVD*

>peptide 3 (31 aa)
MGCLQPCISSSLYFEVGEFSICSSTLSHVSS*

>peptide 4 (31 aa)
MVYFIRLGCKCRYSISHLSQKSSIHQLPAIA*

>peptide 5 (56 aa)
MPHLKLVNKHQMTLNILVSCDSFDHVHEISGTCRHGPRRNWHRDNVSFVFCDISST*

>peptide 6 (37 aa)
MRFLHGHGMLRMKLVVYVGWLLMVAVLIANSLVMIVH*

>peptide 7 (42 aa)
MYMKYQERAGMGLDVTGIGTMFRLCFVIYLQLSCNILRCLEI*

Sequence

>CNT0016572
CCACTAGTTTTCCGCCATTTTCAGAGTTGGTATAAAACCCTAAACCAAGAAATTTCAGTTCAAAATTTCAAATTTCTTGCAGAAGCAGTAGATTAACACA
CCAATTTTGTCGTAGAAAAAGAGAACGAGCCAATGAAAGTCAAGATTTTGCGTATCCTTTTGTGATTATGTCATTGATTTGAAATATTTAAATGAAGGAT
ACGATGGCATGCGGTTTCTTCATGGACATGGGATGCTCAGGATGAAACTTGTGGTATATGTAGGATGGCTTTTGATGGTTGCTGTCCTGATTGCAAACTC
CCTGGTGATGATTGTCCACTAATATGGGGTGCTTGCAACCATGCATTTCATCTTCATTGTATTTTGAAGTGGGTGAATTCTCAATCTGCTCAAGCACATT
GTCCCATGTGTCGTCGTGAATGGCAGTTTAAAGAATGAACAATAGTTCCGTGCATCTTTTGCTCATGAATGTGGCAGTAGGAAGGAATGAAGTGTCTTGT
GTGTGATACTATGAAATTCTAGCGATAATAGCTGAGCTGATATGTGCTCATCCCCATATACAATTATTAATTTAAGCTTTTAAGGCCTAGAATAGATGGT
GTATTTTATCAGACTTGGTTGCAAGTGCAGATATTCTATTAGCCATTTATCCCAAAAGTCCTCAATACACCAGTTGCCAGCCATTGCTTGAGAAGAAAAA
GATATAACGGATGTTTATTTCTGGTCCAAAGTAGGCAGCCTGTCATTATAAGTCTGGCTCCTTTACAACTGCCGCCTCTACCCCATTTATGCCCCACTTG
AAATTGGTAAACAAGCATCAAATGACTCTTAATATATTAGTGTCTTGTGACTCCTTTGATCATGTACATGAAATATCAGGAACGTGCAGGCATGGGCCTA
GACGTAACTGGCATAGGGACAATGTTTCGTTTGTGTTTTGTGATATATCTTCAACTTAGTTGTAATATCTTGAGGTGTTTGGAAATTTGATTTCCCAATT
CTGGCGTTCCCTCTTTCCATGTTATTACCCTTTTTCGAATTACTCTATCATTAATCTTACTGTTGTTTTATTGATTTGCATGTACAGTGCCTTGTTGCGA
C