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Detailed information on CNT0001702


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0010805, E-value = 3e-07 (S. tuberosum)

Expression of CNT0001702

Peptides detected in this lncRNA

>peptide 1 (31 aa)
WDPLNRLRYRQYINVAIMLCGHGVTYHPCAC*

>peptide 2 (47 aa)
VGPTESVTLSAIHQRCDHVVWAWRHLSPLRMLATRSPCIYPVGRRSV*

>peptide 3 (52 aa)
MLPKQILSISMLREKTLEGEEPQFTLCRSPSRSGPAASLRVNIRAFPKILKV*

>peptide 4 (76 aa)
MASLITPAHVSNKKPLHLSSWKAKRVRCAVSPPTWREGLRTVSLSLVISHLLLIPNRDAAQANPFDKYVKRKNIRG*

Sequence

>CNT0001702
AGTGGGACCCACTGAATCGGTTACGTTATCGGCAATACATCAACGTTGCGATCATGTTGTGTGGGCATGGCGTCACTTATCACCCCTGCGCATGTTAGCA
ACAAGAAGCCCTTGCATCTATCCAGTTGGAAGGCGAAGCGTGTGAGGTGCGCAGTGTCACCCCCGACATGGCGCGAAGGGCTGCGCACTGTGTCATTGTC
TCTGGTTATCTCACACTTGCTTCTCATTCCTAACCGTGATGCTGCCCAAGCAAATCCTTTCGATAAGTATGTTAAGAGAAAAAACATTAGAGGGTGAGGA
ACCCCAATTCACCCTCTGCCGGTCTCCATCTCGTTCTGGGCCTGCAGCATCACTTCGTGTAAATATTAGAGCATTCCCCAAAATTTTAAAAGTATGATGT
TATGTGCTGGTGTGGGGTCAGGGAGAAGGAGATGAAGATGGCAAAACGAAACCACAAACTTCCTTGATTTGAGGCCAAGGATCCTCCTCACTAAAGCTAA
GTTTCTCAGAAGTGTATTCTCTGCTTTATTCGAATATGGGCCAAGCTTTTATACATCACTGCTTGAGTCGTTATATGTAATCCTCCAAGTGCCTAGGTTG
CGTGATACTCCTTCGTGGGCGTTCCTCGTGAGTTCCAGGTGGTGAATCTTCATTCCTGCTTCTGCTGCTAACACTGCTAACATATGATGCCAAGCTTCTA
TTTGCCTACCGAAGTAGTCACTTTGGTTGTTACTATCTCCATCGAGGAGTGAAAAAATAAAGAGAAGATTGTAAACTGCTTGATACAGCCATACTTGACT
TCATTATCAAGCAAATTTCAAAAGACTCCTAAACAACACAGAACAACGAACTGCTTCAGTGATTGCTGTTCAAAGCTCACTCCATTGATGATATCCATGT
CTAAAGTGATTCACTTTGTAGTAGATTAATTATTTATGTAATTATGTGTATGAAAGTTAATTAGAGGGTCACAATCTTTCTATAGGTGGTGCAGTACGCA
TTTGACAGTGGCAATGGTAAAACTGCATTCAATGATGTTGATGAATGCCTGAGGTCACTGGAAGAACTTGATTCCTTGCTTCTTCATGCATCAAGAAATG
ATCCTGAAGCCTCAGTCAAATCAATGAAGACAAAAATCAATTCTGCCCTTGGCGCTCTGGACAGGTGATTTGTGTAGTTTTTGTTGTTTTTCTTGCCCAT
AATATCCTTTCTGCCTCGTGCACATATTTCTCCTTGTGACATACCAACTTGGTGTATTTTTGGATATCAGTTCGAAGAGCTCAAAAATATTTTTATTCCT
AATGTAGCAAAGTTTTCCTTGTTCATTTTATGTCTAGGAATTCAGAAATGTGCTAAGTTACATTTCCAACTTTTATCCAAACTTAGTCATGATGCACACA
TATAACTGAGAAAGACGTGATTCTTACTGAGCTTTGTGTTTCAGCCTCTTACAAACCGTACCTTCAGATGTGCTGAGTAAAGGAGAGGTTATAGCTGATT
CATACAGGGAACCGGAAGACGAGGAAACAGGGAGTTTGGACCCTGATTTAAAGCAACTAGAATCAATACTATGAATACCTAACATACTTGCCGTTTCTGA
GTAGCCACGATAGTTAAGACTTAAGACCATGGAACCTATGTTCCAAAGGCAGAACCTTAAAACAAAAATAACATTGTGTATCGAAATATAAAAAAATTGT
ACGAGTCTATTACAATTTTTTCATAAAAAATTGTTTTTTTTTAAATAATCACTTTTAAAAGTTTTCCATGTTTTTATTTTAGTTTTTCAAAATAATCAGA
AATGTAAAG

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA19G03350.1 Uncharacterized protein protein coding CNT0001702 141 104 CDS Trans