Detailed information on CNT0017419


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0042563, E-value = 2e-06 (A. thaliana)
CNT0034328, E-value = 2e-08 (P. patens)
CNT0030302, E-value = 1e-10 (O. sativa)
CNT0015837, E-value = 2e-06 (S. tuberosum)

Expression of CNT0017419

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MILKNHSDSSCRFCKMFFFSSALPIICCNLRIITF*

>peptide 2 (56 aa)
MVDGMDFEELCSDFECISSPYVESIMRQVARDIFELREDNRAFSCYAVPVKYEAPS*

>peptide 3 (42 aa)
MINRGNSNKFPSFFSFRFSPFSDFSLWRDWTSDKGNHNIVYD*

>peptide 4 (56 aa)
MLEIKFYSFWKIITYLFVVAIFHCFIRCSKIVLTGHMLFWPMCYPLLCFIGRVFHA*

>peptide 5 (34 aa)
MLRRQRRQSWGRSRAITEILVSRYVEVSTTWFIN*

>peptide 6 (48 aa)
MFRAPMVLWEGYIFVFIVFSHGVPGSTFYLGLVLSFSPICQHIVVYYL*

>peptide 7 (38 aa)
METFPPRWPRIWPGLTALGSLPRLPHPPSASSGMSRVP*

>peptide 8 (46 aa)
MTRDITCFRASLVTSFFQGIFSFFRGKLVHFLQEKCKSLEKNELPN*

Sequence

>CNT0017419
AGTCGTTGTCTTCTTCGGTTCTTCCTAGCGTCTCCCCGTTCTTCTCTCCGTAGTAGCTAACAGTATAGTGTGGCCTCGCATGGAGACTTTCCCTCCTCGC
TGGCCCCGCATCTGGCCCGGATTAACCGCCTTGGGCTCCCTCCCCAGATTGCCCCACCCACCGTCAGCCTCGTCAGGTATGTCTCGTGTTCCCTAACCTT
GACGCTTCTCCCTTCTCGGCGCCTGCTTCGTTGGTTGCCTTCAGCGGACGCCGCCGATTCGGCTCTCCTGTTCGGCGCCCTCCCCAGATTGCCCCACCCA
CCGTCAGCCTCGTCAGGGTCCTCCCAGGACAAACCATGCTCCGGAGACAGAGGCGGCAGAGCTGGGGCAGGAGCAGAGCCATCACAGAAATTCTTGTCTC
CAGGTATGTTGAAGTTTCAACAACTTGGTTTATAAATTAACATGATTTTAAAAAATCACAGTGACTCCTCTTGCAGATTTTGTAAAATGTTTTTTTTCTC
TAGTGCACTGCCTATCATTTGCTGCAATTTGAGGATTATAACATTCTAGACACACTAAAATCTATCATCTATCATAAACAGTAGCTATTTCCCCCTCTGT
TCTTTGTGTCTCTGATTGTGTGGTACCAGCTACTTTGGCATACATTTGTTTTTTGCTTTAATCTTCTGTTCAGCTTCTAATTCAGAAATCTTTACTTCAG
ATAACCAGAATACTTCAGCTTCCATAGTTCCACTTCCACAGTTGTAACAATCTAGCCTGTAATGGCTTGTAACAGTACAGTGAGTTGGGACACCTCTGAT
GTTTAGAGCTCCAATGGTCCTGTGGGAGGGATATATTTTTGTTTTCATAGTGTTTAGCCATGGGGTGCCAGGGTCTACGTTCTACCTTGGTTTGGTTCTC
TCCTTTTCTCCTATCTGTCAACACATAGTCGTCTATTACTTATAAAAAACCACATTTTCCCATTTTGATCCCTTTATGAACAATGCTGGAAATCAAATTC
TATTCATTTTGGAAAATAATTACATATTTATTCGTCGTAGCTATATTCCATTGTTTTATTAGGTGCTCAAAAATTGTGTTGACCGGACACATGCTATTTT
GGCCTATGTGCTATCCATTGCTATGTTTTATCGGTAGGGTTTTCCATGCTTAGATAACTTCCTAATTTCTCATTTTTTGTAAATAAATAAATACTTGGAG
ATTCTTGGTCAAAGGAATGTTGGACACCTGCTAGCCAATGTGCAGGTAACAGGAACCTGAACAAAATGGCCTTGCAGTCTTTTTTTTGACTGTGTATATC
TTTTTCATGTGGAGTCCATTAAAAATCCATGCATAAGCAGCCGCGAGAGGTCTCAGACAGATAAGATGGTCGACGGCATGGACTTCGAGGAGCTCTGCAG
CGACTTCGAATGCATAAGCAGCCCCTACGTGGAGTCCATAATGAGGCAGGTCGCGCGGGACATCTTTGAGCTTCGCGAGGATAACCGCGCATTCAGCTGC
TACGCCGTCCCCGTGAAGTATGAGGCTCCTTCCTGATGATAATTTATAATGATAAATCGAGGAAACTCCAATAAGTTTCCTTCCTTTTTTTCCTTTCGTT
TTTCTCCCTTCTCTGATTTTTCACTGTGGAGGGACTGGACTTCCGACAAAGGAAATCACAACATTGTATATGATTGACTTGTAATATGTTAGTAAATATG
TCTGTACGTTATGACAAGAGATATAACTTGTTTTAGGGCTAGTTTGGTAACTTCATTTTTTCAAGGAATTTTTTCATTTTTCCGAGGGAAATTAGTTCAT
TTTTTACAGGAAAAATGTAAATCCCTTGAGAAAAATGAGTTGCCAAACTAGCTCTTATCTAGATAATTTGTAGCTCAAAATTTTACATCCAACAAACAAG
GTGTATATATATGTATATTTACATGTATATATGTATGTGTGTGTATATATATAATATATATATATATATATGTGTGTGTGTATGAGTTGTAAACTCTCAT
ATGCCACAAATCTAATGTACTAATGGGGAAAAAAATCTAATTTTGATACCTAACCATGTCTAGAAAGATTTTGCACTGTCATTTGATGTCTGTATTCATC
CTTCTATTCTGGCGGTTGTCCTATAAATTG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GRMZM2G369371_T01 protein coding CNT0017419 336 150 CDS Trans
GRMZM5G882300_T01 Uncharacterized protein protein coding CNT0017419 130 126 CDS Trans