Detailed information on CNT0018242


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0003834, E-value = 2e-09 (V. vinifera)
CNT0000902, E-value = 2e-09 (G. max)
CNT0031375, E-value = 2e-06 (O. sativa)

Expression of CNT0018242

Peptides detected in this lncRNA

>peptide 1 (35 aa)
RLARRIGEVVASARPSSVKPSSPHLHLYGTISTSI*

Sequence

>CNT0018242
CTCGCCTCGCTCGGCGCATTGGAGAGGTAGTAGCTAGCGCACGCCCTTCGTCCGTCAAGCCCAGTAGCCCACACCTGCACCTCTATGGCACTATTAGCAC
CTCTATCTAGTTCTTCTCTCTTCAGCCTCGGATCCAGGCGAGCACCATACCCCTGCAAATAATAAGGTTACCAGCTTGCAGGCAGCCACAGGCACGGCTT
CAACTACAACTTGGCTAGAGAAATTTTAAAAGAAGGTATGTAGCTGGTTTGTTTAATTTATTTATCCTCCCAAATATGGTTACTGTCCAGACACAAAGAT
GTGTTTTGTAGGATAAATAAATTAAGGAAATCTACTATATATAACTTTCTTTGGAATTTGTCTCGCATAAGTTATAGTTAAGCCGTGTGATAAATCTTAT
GGAACTCATGAGCTGAATTATAAGATATCCCCTGTTTAATAATCCTAAATACAGAACAGATACATGTAGCTACTGGCTGAAAGGGAACGAGTAGACAGAA
TAATGCTTGGAAGCTTTGCTGTCTCGCTTTTGGTAGTAGAGACGATACGCGCGCGTATATACATATAGGATCCGTCGGAGAATGTTGAAGACTTGAAGTC
GCCCTACTTTTGGGGGCTAGATTTTCTCTCTCTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTGCAGAGAAGTGATGCGGGTATAGT
TACTTCAAGATAAAAACGTCAAAGTAATGTAAATGAGCTATGGGCTTTTGAGCAAGCACGG

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
AC195220.3_FGT007 Uncharacterized protein protein coding CNT0018242 137 138 CDS Trans
GRMZM2G114001_T01 Uncharacterized protein protein coding CNT0018242 144 123 CDS_UTR Trans
GRMZM2G114001_T02 Uncharacterized protein protein coding CNT0018242 144 123 CDS Trans
GRMZM2G115624_T01 Uncharacterized protein protein coding CNT0018242 166 138 CDS Trans
GRMZM2G154293_T01 Uncharacterized protein protein coding CNT0018242 137 138 CDS Trans
GRMZM2G161248_T01 Uncharacterized protein protein coding CNT0018242 115 107 CDS Trans