« Back to Zea mays search


Detailed information on CNT0018566


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0031808, E-value = 4e-06 (O. sativa)

Expression of CNT0018566

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MRRISRISPSLIQLVPQLALSADSASFRDEDAMKVLSAS*

>peptide 2 (34 aa)
MVLTDSSDNVTAVFRFFVQATVNYLSPQSSPQLS*

>peptide 3 (43 aa)
MKTKAAGSRAAAGAGGFGRSLREQRAKVYIAMRCVVMLLRWHD*

>peptide 4 (41 aa)
MEATAVKIYRSASFHCHVGWCGGMQAWVATDAHMTLLGACN*

Sequence

>CNT0018566
CATATATATACAGGCAGCATTACCATGGATCCTCCATGGCTGCTCTTGATTATGTCCTCAGGACTCAGGTAATACCCTAGCTAGCATGGGCCGAGATCAA
GCTGCATCGCATCTGATCGGGCAGGGGCCGGAGTTCCTGATGAACAAGATACATATATAGGTAGTAGAAACTAAACAGATTAAAGACACATATGCAGTGG
CTTCAGCTAATCTTCAAGACTGCAAACGTAAGGATACAGAGCTAGCTGCTTGAGGTGGGATCATGCAAGACTGCTTAATTACCTACCTATAGCTTAACTT
GAAGCGCCTGCTGCAGTTTGTGCAAAACTGCAGCTTCATTTTCTCTTTCAGCTCATACCTTGAGCTGTTTATTTATTTTTGGGATGTCGATTATATGCGA
CGAATCAGTCGAATTTCACCTTCATTAATTCAGTTGGTCCCACAGTTAGCACTCTCTGCTGACAGTGCAAGCTTCAGGGACGAAGATGCAATGAAGGTGC
TCTCTGCCTCCTAAAACGGGTACGTCCAAGCATCAGGATCATGTGCATGACTCGCAGCCGACAAGAGGAATCGGATCATGGAGGCCACTGCAGTTAAAAT
ATACAGAAGCGCAAGTTTTCACTGTCATGTCGGATGGTGCGGCGGCATGCAGGCGTGGGTTGCCACTGATGCCCACATGACGCTCCTCGGGGCCTGCAAT
TGATTATATGCTCACTTGCAACTAACTCACTCACTAATAATACTTACTCCTGTCCTGCAGCTCTGTCTGCTTAAGCCTGTAGCTAGCTCTAGCTATATAA
AGAGACATGGCCATGTCAAGCTGCCTGAACCAACATATCGCAGCAAGCTAAGCTAACCTATTCTGCCATTGCCGCTTCTGTCGCACAAGTTAGTAAGGAA
GCCTGAGGATGAAGACCAAGGCGGCTGGGAGCCGAGCAGCCGCTGGAGCTGGAGGGTTCGGCAGATCTCTCAGGGAGCAGAGGGCCAAGGTGTACATCGC
CATGAGATGCGTCGTCATGCTCCTCAGGTGGCATGACTGATCTCTATGCACTGACTCACTGATCCGGCAAGAATTTTGACGTCTGAGCATAGCATTCTTT
GTTTTCTTCTTGCTTGCTTGTTCTCCGGTTACCAGAATGGTAGGGAGAGCAGGCAGGCCAGGTGATGTATGTAACTGCAGTTGTAGAGAACTCTAGCTAG
AGATGGATGGTGCTAACAGATTCATCAGATAATGTAACTGCTGTATTCAGATTCTTTGTCCAAGCTACAGTAAACTATCTCTCCCCTCAGTCCTCCCCAC
AGCTCTCTTGAATTCTATCTGTGTGTGTGTGTCCCCTGTGACATGAACAACCAACAACCAAAGCAAAAGCAATGGAGCAGGGCCGTGATCATTTTCATCC
ATTCTGTACAGGCTAAGCTCCTACTGTGACTACCGCTGTAGAGAACTCTCGAGCACA

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GRMZM2G456000_T01 Uncharacterized protein protein coding CNT0018566 740 254 CDS_UTR Trans
GRMZM2G456000_T02 Uncharacterized protein protein coding CNT0018566 680 233 CDS_UTR Trans