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Detailed information on CNT0001897


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8LEF6|AB11I_ARATH, E-value = 4e-63

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0008536, E-value = 4e-12 (S. tuberosum)

Expression of CNT0001897

Peptides detected in this lncRNA

>peptide 1 (137 aa)
MTTVLRPPIGLRFLQPPQLSPSPTSCVSFSLSLKLPRINSNYSSFEVRDVTYQPPGTQLRLLNSVSFSLPEKSFGLIFGQSGSGKTTLLQLLAGISKPTS
GSIYIQEYESDGNPSQPPEPLVPERVGIVFQFPERLD*

>peptide 2 (36 aa)
MRVMEIPVNLQSPWCRKGLVLSSSFPRGWIKWDIIE*

>peptide 3 (36 aa)
MSMLQEIIAVLESSTSCLESDGCHIFPGENCSKVQA*

Sequence

>CNT0001897
GAGAAATTAAAAAGAGAGATATGTTTTACCCTTAGCCGGTCGTTAAAATTTCTGTAGTTCGAAGCAAATATTCCATCGTCCCATCCTGCCGGTTTGCCGT
AGCTGGAACCCGGAAAACACACCCGGAGCCACCGTGAATGACGACCGTTTTGAGGCCACCGATTGGGTTGCGCTTCCTCCAACCACCACAGCTTTCCCCT
TCTCCCACATCGTGTGTTTCTTTCTCCCTCTCACTCAAGCTTCCCAGAATCAACTCTAATTACTCCTCTTTCGAAGTTAGAGACGTTACCTATCAACCCC
CGGGGACTCAGCTTAGACTTCTGAATTCAGTTAGTTTTTCACTTCCAGAGAAGAGTTTTGGTTTAATTTTCGGGCAGAGTGGAAGCGGAAAAACAACTCT
GTTGCAGCTTCTTGCAGGAATAAGCAAACCAACCTCTGGATCTATTTACATTCAAGAATATGAGAGTGATGGAAATCCCAGTCAACCTCCAGAGCCCTTG
GTGCCGGAAAGGGTTGGTATTGTCTTCCAGTTTCCCGAGAGGTTGGATTAAGTGGGATATCATTGAATAAAAATCCTCACTCCCTCAGTGGTGGTTACAA
GCGTCGTCTTGCCTTAGCAATACAATTAGTGCAAACCCCTGATCTATTGATATTGGATGAACCTCTTGCAGGACTTGATTGGAAAGCACGTGCAGATGTT
GTGAAGCTTCTGAAGCATCTAAAAAAGGAATTAACTGTGTTAGTTGTCAGCCATGATTTGAGAGAGTTCGCAAGTCTTGTTGATCGATCATGGAGAATGG
AAATGGGTGGCAACCTTAGAGAGGAATTTCTACCATTATGATTTATGTTCATTGCCTTGTTAATCAGCATGAGATGCCATGAGCATGTTGCAGGAGATAA
TTGCTGTTCTTGAAAGTTCAACCTCATGCCTAGAAAGCGATGGGTGTCATATTTTCCCAGGGGAAAACTGTAGTAAAGTTCAGGCCTGAATACTATTAAG
CAATGTTCATTTATAAGATATACACGAATGTGCTGCAGTAACTTTGAGGACTTTTCTATGCATAGGGACAAATAATTGTTGCGGCTCATTCAAAGCTAAA
CATGCTTAAGCTATTGTTTCTCCATTAATGGTAATTTGTAATTGAATTAGCTCAATATATTGAACATACTTAATTAGAACACCTTTAGTTCATGATGGAC
CTTTCTTTCTAGTCAATTTTTGAGGCATCAACTAATAATTTTCG