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Detailed information on CNT0019000


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004985, E-value = 7e-09 (V. vinifera)
CNT0042889, E-value = 5e-16 (A. thaliana)
CNT0034678, E-value = 3e-08 (P. patens)
CNT0023382, E-value = 1e-10 (A. trichopoda)
CNT0028316, E-value = 7e-09 (O. sativa)

Expression of CNT0019000

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVLSLFSFAENIKWCLHSDGKVKTSFRCYI*

>peptide 2 (35 aa)
MIVSNFSLSLSLSISISISISISLSLSTFQCSGQR*

>peptide 3 (104 aa)
MVLHLTDCTTCNPLVDLLCFIHLIFHLWMPEWLLLDLHDCQQLLSLSLSIYLYLYLYLYLSLSLHISVQWTEMIVYWSCLDPCLVDIVFGDSFISRYMKS
WTCI*

>peptide 4 (32 aa)
MIYSINMWWYFSSYLLHAKVDSFPWELRVNTA*

>peptide 5 (32 aa)
MHICSHIKWFGGSSKSEICMTLWSTLLQLTVS*

>peptide 6 (70 aa)
MNLCEVKVSIHCTRSISCTLYLLLPPVPEESRVLWIDLNMSKMKLVYLPAVTPTFHLHSRGVQSVYRMRS*

Sequence

>CNT0019000
CTCAAATTTAGGGTACCTAGTCTAATTTGTATGTGATGTGTGTTCCTGAATTGTTTTATGGTTTTATCTCTCTTTTCATTTGCTGAAAATATTAAATGGT
GTTTGCATTCTGATGGAAAAGTAAAAACGAGTTTTAGGTGCTACATCTAATTTTCTATTTCAATGAAGTTATCATAAAAGTTCTGTATGTCTCTGATTTT
GTATTTCAATGAACTTATCATAAAAATGTGTTTATGGTGCTACATTTGACGGACTGTACCACTTGTAACCCTTTAGTTGACTTACTTTGTTTTATACATC
TGATTTTTCATTTGTGGATGCCTGAGTGGTTACTATTAGATCTGCATGATTGTCAGCAACTTCTCTCTCTCTCTCTCTCTATCTATCTCTATCTCTATCT
CTATCTCTATCTCTCTCTCTCTCTCCACATTTCAGTGCAGTGGACAGAGATGATCGTCTATTGGAGCTGTTTGGATCCCTGTCTGGTAGACATTGTTTTC
GGTGACAGCTTTATTTCTCGGTATATGAAGTCATGGACCTGTATTTAGGGGTGGTAACGGGCCATTTAATTTAGCCTAGCAAATTTAAGGATCGGATCAA
GTTAAGGCCGGATCATAAAACAATATAATTTTGAACTAACAAAATTAAGGGCCTTATTAGTTTGTGAAGCAAGTATTAGGGCCATGATCCATTACCACCC
CTACCTGTATTAAGTAAAGGTAGGAGCCTCAGCATTTTTGTATGTTTAAATAGTTTTATCAGAGATTACTGGTTGCTGAGGAACCTTTTGTGATGATAGT
TGATATCCTCACTGCCAGCTGATGCCCACCTGCGTGCAATGAAACCTGAGTGAAACCGCAGGCACTAGCAATTATGAGGCCTTGTATTAGGTCACATTTT
GTGAAAAATATATTTCTCGGATGTTGCACGCACATTTTAACTTGCGCCGCCAATGACTAATCTCGTTTGCCATAGTTTTGTCAGTTTTGAATATGTTTTA
ATCTAGCATGCTTCTTTCCATGACTATTTTAGTTAATTATTTATTTTTAAGTGATGATGCATTTATAAGTTCTGATCTCAAGTACAAATCATAGCATCAG
TCTGAATAGTATCACCAGTACCAATTAGTTACTCTTTCCATCCCAAAATAAATGTACATTACGCTTTTGAGGAGTCAAACTCTTTTAAGTTTGACTGGTT
ATGTAGAAAATTGTATCAATGATTGTATCTTCAAATAAGTTTCTCATGAAAGTACTTTCCACAATCTACATCATGATGCTTCATCATGAATATTAGTACT
TTTGTATGCATATTTGTTCACACATAAAATGGTTTGGCGGCTCCTCAAAAAGTGAGATCTGCATGACCCTATGGAGTACCTTGTTACAACTTACAGTATC
TTAAATCATGGTCTAGAGTTATTCTCTTATATGAATATTGAATAGCATATGCCTTGTCTGCTCCAAGATAGACCGTTTTTATTAGTGATAGACTGATAGT
GTTTGAACTATACAGTGGCATGCTTACAACATTTATATTTTCTACTTTGAAAGTTCCGCACATCTTTAGTTAATGTATGGATTGGGGGACTGCACCACTT
AACCTTTGAGTTGACTTTGCTGTAGATCTGTGTTTTCATTTGTGGGATTGTCTGAACTATCATTATTAGGTCTGCATGATTTATTCTATTAACATGTGGT
GGTATTTTTCTTCATATCTATTGCATGCGAAGGTTGATTCTTTTCCATGGGAGCTCCGTGTAAACACAGCATGAATATGTTGTTCCCAAAGATAAGTGGC
AATGCATCATTTTAAAAAGATGCACATTGGTTTGTAGGCGCAAGCGCAAGAAGCCATGAACCTGTGCGAAGTCAAGGTCAGCATTCATTGTACACGTTCC
ATCTCGTGTACATTGTACTTATTACTCCCCCCTGTCCCCGAAGAATCTCGTGTACTTTGGATTGACCTTAACATGAGCAAGATGAAGTTGGTTTATTTAC
CGGCCGTTACACCAACGTTTCACTTACATTCGCGTGGTGTGCAGTCAGTATATCGGATGAGGAGTTGAGGACATCAACTTTTTTTTGCGGCAGGTACGTA
TGTAGTTGGTAATACAGATTACAGTGACTCAGTTAATGTCGATGTACCGGATCATGTGTTCCTTACTTTTGCAATAGTGCTCGATCGTTCCGATCAACTT
TTGCGTGCATCTCGAACGAAAGACAAGTGATGTAGTCCCTCCAATTCTTTTTTATTTATCGCG

lncRNA-RNA interactions

Number of interactions: 14

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GRMZM2G071573_T01 Putative STRUBBELIG family receptor protein kinase protein coding CNT0019000 133 65 UTR5 Trans
GRMZM2G071573_T01 Putative STRUBBELIG family receptor protein kinase protein coding CNT0019000 133 65 UTR5 Trans
GRMZM2G071573_T01 Putative STRUBBELIG family receptor protein kinase protein coding CNT0019000 133 65 UTR5 Trans
GRMZM2G071573_T01 Putative STRUBBELIG family receptor protein kinase protein coding CNT0019000 133 65 UTR5 Trans
GRMZM2G071573_T01 Putative STRUBBELIG family receptor protein kinase protein coding CNT0019000 133 65 UTR5 Trans
GRMZM2G071573_T01 Putative STRUBBELIG family receptor protein kinase protein coding CNT0019000 133 65 UTR5 Trans
GRMZM2G071573_T01 Putative STRUBBELIG family receptor protein kinase protein coding CNT0019000 133 65 UTR5 Trans
GRMZM2G071573_T01 Putative STRUBBELIG family receptor protein kinase protein coding CNT0019000 133 65 UTR5 Trans
GRMZM2G071573_T01 Putative STRUBBELIG family receptor protein kinase protein coding CNT0019000 133 65 UTR5 Trans
GRMZM2G071573_T01 Putative STRUBBELIG family receptor protein kinase protein coding CNT0019000 133 65 UTR5 Trans
GRMZM2G071573_T01 Putative STRUBBELIG family receptor protein kinase protein coding CNT0019000 133 65 UTR5 Trans
GRMZM2G071573_T01 Putative STRUBBELIG family receptor protein kinase protein coding CNT0019000 133 65 UTR5 Trans
GRMZM2G071573_T01 Putative STRUBBELIG family receptor protein kinase protein coding CNT0019000 133 65 UTR5 Trans
GRMZM2G095206_T01 NAD(P)-binding Rossmann-fold superfamily protein protein coding CNT0019000 96 53 UTR5 Trans