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Detailed information on CNT0019050


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 7e-46

BLAST vs NONCODE (A. thaliana): nothing found

Potentially orthologous lncRNAs:
CNT0033674 in P. patens

CNT0009867 in S. tuberosum

Most similar lncRNAs:
CNT0005932, E-value = 3e-25 (V. vinifera)
CNT0033674, E-value = 5e-27 (P. patens)
CNT0000474, E-value = 7e-23 (G. max)
CNT0028472, E-value = 1e-73 (O. sativa)
CNT0009867, E-value = 9e-44 (S. tuberosum)
CNT0035799, E-value = 7e-20 (C. reinhardtii)

Expression of CNT0019050

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MNRCCICHHVYASVKPTSTCIPILDRYFHPS*

>peptide 2 (47 aa)
MQRNKKNHEIDPVCGTARAIPGFPKEKHWQVSNQNVSDVQVASVYER*

>peptide 3 (42 aa)
MDRNADLEKVERGGGGGRAAYLEAEVPTGGFGGDLVVCVCAPN

>peptide 4 (50 aa)
MKSIPSAERLEPSQDSPKRNTGKLAIRTCLTYRSHPCTNASSTDLTQTRI*

>peptide 5 (31 aa)
MLHMPSCICISKTHINMYTYPRSIFPSILNS*

>peptide 6 (45 aa)
MNDRPTTPHHHNQANKKHLCICISKTRINMYTYPRSIFPSIIFNS*

>peptide 7 (85 aa)
LYKDLHTTPETEHKVEGALLLDVVVSKRAPVLKLFASKDEPLLVWGDALLVLDLGLNVVNGVRRLHLEGDSLASQGFHKDLHLQK*

>peptide 8 (65 aa)
MSRCWSGGMPSLSWILALTLSMVSDDSTSRVIVLPVRVFTKICICRSNTKQQGEHRQKKQYQANK*

Sequence

>CNT0019050
CTTTACAAAGATCTGCATACCACCCCTGAGACGGAGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCGTCCTCAAGC
TGTTTGCCAGCAAAGATGAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATGGTGTCAGACGACTCCACCT
CGAGGGTGATAGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATCTGCAGAAGTAACACCAAACAACAGGGTGAGCATCGACAAAAGAAACAGTACCA
AGCAAATAAATAGCGTATGAAGGCAGGGCTAAAAAAATCCACATATAGCTGCTGCATATGCCATCATCCAAGTATATCAAGATCAAAATAATTATAAAAC
ATACTTGTTTATTATAATAGATAGGTACTCAAGGTTAGAGCATATGAATAGATGCTGCATATGCCATCATGTATATGCATCAGTAAAACCCACATCAACA
TGTATACCTATCCTAGATCGATATTTCCATCCATCTTAAACTCGTAACTATGAAGATGTATGACACACACATACAGTTCCAAAATTAATAAATACACCAG
GTAGTTTGAAACAGTATTCTACTCCGATCTAGAACGAATGAACGACCGCCCAACCACACCACATCATCACAACCAAGCGAACAAAAAGCATCTCTGTATA
TGCATCAGTAAAACCCGCATCAACATGTATACCTATCCTAGATCGATATTTCCATCCATCATCTTCAATTCGTAACTATGAATATGTATGGCACACACAT
ACAGATCCAAAATTAATAAATCCACCAGGTAGTTTGAAACAGAATTCTACTCCGATCTAGAACGACCGCCCAACCAGACCACATCATCACAACCAAGACA
AAAAAAAGCATGAAAAGATGACCCGACAAACAAGTGCACGGCATATATTGAAATAAAGGAAAAGGGCAAACCAAACCCTATGCAACGAAACAAAAAAAAT
CATGAAATCGATCCCGTCTGCGGAACGGCTAGAGCCATCCCAGGATTCCCCAAAGAGAAACACTGGCAAGTTAGCAATCAGAACGTGTCTGACGTACAGG
TCGCATCCGTGTACGAACGCTAGCAGCACGGATCTAACACAAACACGGATCTAACACAAACATGAACAGAAGTAGAACTACCGGGCCCTAACCATGGACC
GGAACGCCGATCTAGAGAAGGTAGAGAGGGGGGGGGGGGGAGGACGAGCGGCGTACCTTGAAGCGGAGGTGCCGACGGGTGGATTTGGGGGAGATCTGGT
TGTGTGTGTGTGCGCTCCGAAC

lncRNA-RNA interactions

Number of interactions: 23

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GRMZM2G116689_T02 Polyubiquitin 2; Uncharacterized protein protein coding CNT0019050 249 137 CDS Trans
GRMZM2G118637_T03 Putative ubiquitin family protein; Ubiquitin2 protein coding CNT0019050 546 246 CDS Trans
GRMZM2G118637_T03 Putative ubiquitin family protein; Ubiquitin2 protein coding CNT0019050 502 228 CDS Trans
GRMZM2G118637_T04 Putative ubiquitin family protein; Ubiquitin2 protein coding CNT0019050 575 246 CDS Trans
GRMZM2G118637_T05 Putative ubiquitin family protein; Ubiquitin2 protein coding CNT0019050 576 245 CDS Trans
GRMZM2G118637_T05 Putative ubiquitin family protein; Ubiquitin2 protein coding CNT0019050 575 246 CDS Trans
GRMZM2G409726_T01 Ubiquitin2 protein coding CNT0019050 988 316 CDS_UTR Cis
GRMZM2G409726_T01 Ubiquitin2 protein coding CNT0019050 1417 495 CDS Cis
GRMZM2G409726_T02 Ubiquitin2 protein coding CNT0019050 988 316 CDS_UTR Cis
GRMZM2G409726_T02 Ubiquitin2 protein coding CNT0019050 658 246 CDS Cis
GRMZM2G409726_T02 Ubiquitin2 protein coding CNT0019050 466 228 CDS Cis
GRMZM2G409726_T02 Ubiquitin2 protein coding CNT0019050 1417 495 CDS Cis
GRMZM2G409726_T03 Ubiquitin2 protein coding CNT0019050 988 316 CDS_UTR Cis
GRMZM2G409726_T03 Ubiquitin2 protein coding CNT0019050 570 246 CDS Cis
GRMZM2G409726_T03 Ubiquitin2 protein coding CNT0019050 1417 495 CDS Cis
GRMZM2G419891_T01 Putative ubiquitin family protein; Ubiquitin2 protein coding CNT0019050 677 290 CDS Trans
GRMZM2G419891_T02 Putative ubiquitin family protein; Ubiquitin2 protein coding CNT0019050 677 290 CDS_UTR Trans
GRMZM2G419891_T03 Putative ubiquitin family protein; Ubiquitin2 protein coding CNT0019050 677 290 CDS Trans
GRMZM2G419891_T03 Putative ubiquitin family protein; Ubiquitin2 protein coding CNT0019050 638 246 CDS Trans
GRMZM2G419891_T03 Putative ubiquitin family protein; Ubiquitin2 protein coding CNT0019050 585 246 CDS Trans
GRMZM2G419891_T04 Putative ubiquitin family protein; Ubiquitin2 protein coding CNT0019050 677 290 CDS Trans
GRMZM2G419891_T04 Putative ubiquitin family protein; Ubiquitin2 protein coding CNT0019050 611 246 CDS Trans
GRMZM2G419891_T04 Putative ubiquitin family protein; Ubiquitin2 protein coding CNT0019050 477 228 CDS Trans