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Detailed information on CNT0001988


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P00865|RBS1_SOYBN, E-value = 2e-41

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0043308, E-value = 1e-12 (A. thaliana)
CNT0033559, E-value = 6e-15 (P. patens)
CNT0025517, E-value = 9e-17 (O. sativa)

Expression of CNT0001988

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MHCTLPPLLAMEVMSLLVFLVGKPAMDLRPVNGATMPAPARLTVVTAGEEIIEEAICFSFLFSTTCSSAARYPSFCSNLLYIIV*

>peptide 2 (63 aa)
HPFISENRNKKLHDDKSQKEKANRNWFDPQVQVYEEQELREVRPLNESPWLKGLVFSFRTRIL*

>peptide 3 (35 aa)
MVVEFDIICEWFVLCPHSILNLTYFVTIISHAWVR*

>peptide 4 (38 aa)
IHSFLKTETKNYTMINLKKKKQIGIGLIPKSKCMKSRS*

>peptide 5 (72 aa)
MNYNHFGASCVFICVELSYLHALHSSTVASNGGNVIVGLPGGEASHGLEASEWSNHAGTGTVDSGNSWGRDH*

>peptide 6 (45 aa)
MKLMHYTWRTLSNPMIRMKLMHCTWRTLSNPMIRMKPLGYAVLAS*

Sequence

>CNT0001988
CATCCATTCATTTCTGAAAACAGAAACAAAAAATTACACGATGATAAATCTCAAAAAGAAAAAGCAAATCGGAATTGGTTTGATCCCCAAGTCCAAGTGT
ATGAAGAGCAGGAGTTGAGAGAGGTTAGACCACTAAATGAATCTCCATGGCTTAAGGGATTAGTCTTTAGCTTTCGGACGAGGATACTTTAGGCAACCAA
CAAAAAGGAAAAGAAAAAGAAATATAAATGTGGTTTAAGTACAAAGAAAGAAAGTGGGGGTAAGCTTTTCACACTTAGAAGCCTAGGGGCTTGTAGTCGA
TGAAGTTGATGCACTACACTTGGCGAACGTTGTCGAATCCGATGATACGGATGAAGCTGATGCACTGCACTTGGCGAACGTTGTCGAATCCGATGATACG
GATGAAGCCGTTGGGGTATGCAGTCTTAGCCTCTTGAAGCTCCTTCAACACCTGAGAAGCATCAGTGCAACCAAACATAGGCAGCTTCCACATGGTCCAG
TAGCGTCCATCGTAGTATCCTGGTGACCTGTTGTGCTCACGGTACACGAAACCGTGCTGCAAACAAGCAGATCAACCATCAAAACTCAAAACCAAGTGCT
TGTTTTGGAAGAATAAAATTTGGTCAGAGATAGGAACAGATTTGATACATATTGATAACTCTCAGATAGAAAAATCTGTTAGATAAATTTAAATTTTGGA
ACACAACCATTTTTTGTTTTGTTTCCAAAAGTACTTTTAGCACACTAGCTAGAGAAGCGATTATTTCTTGAAAATAAGTTGAAACAAACTAAGAATAAGA
AAATCTATGATTAAACCAAAAGTGTTTGCAAGAAATTGACCTCCAACTCGAATTCCAAGCAAGGAATCCATCCCTTCCTAAGAAGGTATTCTACTTCCTT
TGCCAATTGTGCATCATCAAGGTCTGGCAGGTAGGAAAGAGTCTCAAACTTCTTCTTGCCAACTGGTGGCCACACCTAGTAATTAATTTGCATGAAAATT
GAGTAAAGGGGTTAACAGATTAACTAGCACATGTGCAAATTTTCCTATGACTAAAATTTAAGCAACCTATGACTAACATGTTTATTTAAGTAACATTTAG
GTACATGCCTAAATATGTAACATGAATTATAATCATTTTGGTGCCTCTTGTGTATTTATATGTGTGGAGTTGTCATACCTGCATGCATTGCACTCTTCCA
CCGTTGCTAGCAATGGAGGTAATGTCATTGTTGGTCTTCCTGGTGGGGAAGCCAGCCATGGACTTGAGGCCAGTGAATGGAGCAACCATGCCGGCACCGG
CACGGTTGACAGTGGTAACAGCTGGGGAAGAGATCATTGAGGAAGCCATTTGCTTCTCCTTCTTATTCTCAACTACTTGTTCTTCTGCTGCCAGATATCC
AAGCTTCTGCTCAAACTTACTATATATAATAGTGTGATTTGTGTAGTACTAATCCGATGGTGTGAAATGGAGGGGATTGGTTGCTGAGAAGTTACAACCG
TTGGATTGAATAAGTGATGACATTACAGCATATTGGCCACACGAGTGAGGAAAATTTTGAATGGTAGCCTTATCGTTAGGTACCATGTGGAAGTGACACG
TGGAGGAGGCTTCATTATCTTATCTCTTCCTTGGAAGAACGTAAAATGTGTGATGGTGGTGGAGTTTGATATTATTTGTGAGTGGTTTGTACTGTGCCCT
CATTCCATATTAAACCTAACATATTTTGTGACCATCATATCTCATGCATGGGTTAGGTGAAAACCCTT

lncRNA-RNA interactions

Number of interactions: 13

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA13G07610.1 Ribulose bisphosphate carboxylase small chain 1, chloroplastic protein coding CNT0001988 1642 1094 CDS_UTR Trans
GLYMA18G39900.2 Uncharacterized protein protein coding CNT0001988 195 133 CDS Trans
GLYMA18G53430.2 Ribulose bisphosphate carboxylase small chain protein coding CNT0001988 247 149 CDS Trans
GLYMA19G06340.1 Ribulose bisphosphate carboxylase small chain 4, chloroplastic protein coding CNT0001988 3248 1183 CDS_UTR Cis
GLYMA19G06340.3 Ribulose bisphosphate carboxylase small chain 4, chloroplastic protein coding CNT0001988 3248 1183 CDS_UTR Cis
GLYMA19G06340.5 Ribulose bisphosphate carboxylase small chain 4, chloroplastic protein coding CNT0001988 3248 1183 CDS_UTR Cis
GLYMA19G06340.5 Ribulose bisphosphate carboxylase small chain 4, chloroplastic protein coding CNT0001988 254 100 CDS_UTR Cis
GLYMA19G06370.1 Ribulose bisphosphate carboxylase small chain 4, chloroplastic protein coding CNT0001988 2942 1056 CDS_UTR Cis
GLYMA19G06390.2 Ribulose bisphosphate carboxylase small chain protein coding CNT0001988 528 284 CDS Cis
GLYMA19G06390.2 Ribulose bisphosphate carboxylase small chain protein coding CNT0001988 506 278 CDS Cis
GLYMA19G06390.2 Ribulose bisphosphate carboxylase small chain protein coding CNT0001988 527 220 CDS Cis
GLYMA19G06420.1 Ribulose bisphosphate carboxylase small chain protein coding CNT0001988 430 228 CDS Cis
GLYMA19G06420.1 Ribulose bisphosphate carboxylase small chain protein coding CNT0001988 642 260 CDS_UTR Cis