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Detailed information on CNT0019907


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LGV5|CIPK1_ORYSJ, E-value = 1e-77

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0003887, E-value = 5e-12 (V. vinifera)
CNT0043564, E-value = 2e-11 (A. thaliana)
CNT0035158, E-value = 2e-11 (P. patens)
CNT0002248, E-value = 3e-13 (G. max)
CNT0022384, E-value = 2e-11 (A. trichopoda)
CNT0031834, E-value = 1e-12 (O. sativa)
CNT0008938, E-value = 2e-08 (S. tuberosum)

Expression of CNT0019907

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSFGKLCIHTEESSHTEQPNHAIVPRDVEVER*

>peptide 2 (44 aa)
PSTLERSSLDDSVLAIWSVLQAPSSSESLSHSCFNRVEILDDCV*

>peptide 3 (39 aa)
HRRSRGRHSMIQSSRSGLSCRHLAHRRAFRTAASTELKF*

>peptide 4 (59 aa)
MMDRAQTPGKRSRIVLLRDACVFFSALVLNKSKVSCVILPRCTPTMMTGSWNTCYSSRP*

>peptide 5 (56 aa)
MLISTLPAPLWTLNPISMTTLSILSNRSLGGCVEVNRIFLCAASCNGSRNHRIEVR*

>peptide 6 (31 aa)
MVITIHAYLYLACPPMDFESHLHDNALDLVK*

Sequence

>CNT0019907
GCCATCGACGCTCGAGAGGTCGTCACTCGATGATTCAGTCCTCGCGATCTGGTCTGTCTTGCAGGCACCTAGCTCATCGGAGAGCCTTTCGCACAGCTGC
TTCAACAGAGTTGAAATTTTAGATGACTGCGTATAGATAGATCTGCATGGGATTTATCTGGCAAAAAGAACGTAGCATTCGGTGCGCATTGTTACCTGTC
TATACAACGTAGAGTCTCCGTGGGATTTCCTAAGCTCTACGACATATAATGATGGACCGAGCTCAAACACCTGGAAAAAGATCAAGAATTGTACTGTTAA
GGGACGCGTGTGTATTCTTTTCTGCATTGGTTTTGAATAAAAGCAAGGTGTCCTGTGTCATTTTACCTCGGTGCACACCAACAATGATGACGGGTTCCTG
GAACACTTGCTATTCTTCAAGACCTTGAGCTGTAAAACACAGCATGACTTCAAGTTCAGTTCAGCTACCCCATCAATTTATATAGGAGTATTATATATAT
ATATATATATATATATATATATATATGCAATGGTGATTACAATACATGCTTATCTCTACCTTGCCTGCCCCCCTATGGACTTTGAATCCCATCTCCATGA
CAACGCTCTCGATCTTGTCAAATAGATCCTTGGGTGGGTGCGTCGAAGTGAACCGAATCTTTCTTTGCGCTGCATCCTGCAATGGATCCAGGAACCATAG
AATAGAAGTGAGGTGACTTTTCATGCATGTCTCGCTTTTTATGAACATTCAATGAACTGTACAAACAAAACACAAACCTCTTCCTCGAAGAAACCAGAAA
GGTCAAGGGAAGAGGCCATCCCGATCAACTGAAAAGCGTTGATAGGAGAACACTTCTCTTGCGCCGGCTCATCGATTGGCTTCAGGAAGAAGAAACCAAA
ACAGTCAGCTTTAATTAATACAAGAAACCAAAAGAATCGAGTAGTTCCTCCCATTCTCTCTCCTCTCACAGCTTTACACACCTTTATCGAGGGAGCTGGA
CTAGGAAGGACGTCTTCGTCATCATCGTGCGGAACAGCAGGCACGTAGTCCTTCTTGAACCACTCGTGCTCCCTGATCCCCGCGACGTTGATCCTCTTCA
TCGGATTCGGTTCCTGTCGTCGAAGGGAAGGCAGCCAACAAGCATCACGTAGAGGATCACCCCACACGACCAGAGATCTGACAAGGAGCCGTCATAGCCT
CTGTTTTGCAGAACCTGGCATGAATTTAGCACAGAATCAGCACAGCCGAGAGGAGAGAAACTGATGAAATGAAACTGCTTGCTGCCGGTTCTTTAAATAC
CTCAGGAGCTATGTAGTTGGGGCTGCCACATGTTGTGTGCAGAAGTCCGTCACTCTGAAAGGTGTGAAGCGCATGTCGTTTGGTAAATTATGCATACATA
CAGAGGAATCATCGCATACAGAGCAACCAAACCATGCCATCGTACCCCGAGATGTTGAGGTAGAGCGCTGAGGCCGAAGTCAGAGATCTTGATGGTGCCC
TTCCGATCAACAAGGACATTCTCTGGCTGTAACAGACAGAAGAAT

lncRNA-RNA interactions

Number of interactions: 12

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GRMZM2G170120_T01 Uncharacterized protein protein coding CNT0019907 1306 437 CDS Cis
GRMZM2G170120_T01 Uncharacterized protein protein coding CNT0019907 3212 1112 CDS Cis
GRMZM2G170120_T02 Uncharacterized protein protein coding CNT0019907 1306 437 CDS Cis
GRMZM2G170120_T02 Uncharacterized protein protein coding CNT0019907 3212 1112 CDS Cis
GRMZM2G170120_T03 Uncharacterized protein protein coding CNT0019907 1306 437 CDS Cis
GRMZM2G170120_T03 Uncharacterized protein protein coding CNT0019907 3212 1112 CDS_UTR Cis
GRMZM2G170120_T04 Uncharacterized protein protein coding CNT0019907 1306 437 CDS Cis
GRMZM2G170120_T04 Uncharacterized protein protein coding CNT0019907 3212 1112 CDS Cis
GRMZM2G170120_T05 Uncharacterized protein protein coding CNT0019907 1306 437 CDS Cis
GRMZM2G170120_T05 Uncharacterized protein protein coding CNT0019907 3212 1112 CDS Cis
GRMZM2G170120_T06 Uncharacterized protein protein coding CNT0019907 3212 1112 CDS Cis
GRMZM2G170120_T06 Uncharacterized protein protein coding CNT0019907 1306 437 CDS Cis