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Detailed information on CNT0019995


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|B6TB21|DRE2_MAIZE, E-value = 3e-37

BLAST vs NONCODE (A. thaliana): nothing found

Potentially orthologous lncRNAs:
CNT0029310 in O. sativa

Most similar lncRNAs:
CNT0043554, E-value = 9e-08 (A. thaliana)
CNT0034291, E-value = 2e-08 (P. patens)
CNT0000395, E-value = 1e-10 (G. max)
CNT0029310, E-value = 3e-29 (O. sativa)
CNT0010524, E-value = 1e-06 (S. tuberosum)
CNT0036096, E-value = 4e-22 (C. reinhardtii)

Expression of CNT0019995

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MPVAATLSHTGTNNFEAKTHYASRETPEQTPSC*

>peptide 2 (76 aa)
TNWKLWFLQVLLSQETVFINQIRVVVNLNLGKGFCCFLKGKRRAHAPASLLCLNLQVVQISTKTKACTAKLTYYNT*

>peptide 3 (42 aa)
MHLQKATSHLMHGRTIVWSRFCDNTHTHTHTHTHTHTHTHTA*

>peptide 4 (81 aa)
MQGHRSCRQGGGSRRGHGSCGGSCCGLGKTFARQYLRESGARMRDADNLGEGKGNYWVENFLFFTPKHVFGLVLAFFWRCS*

>peptide 5 (38 aa)
YQLEVVVSSGPPQSRDCLHQSDQSRRQFESWEGLLLFS*

>peptide 6 (33 aa)
MSFVNPWDLEQLQELPKKLFPKTSYRGLLKKIH*

>peptide 7 (52 aa)
MLALGLFINTHIHNQEAYITEPLNLIIKIQMLNPWLKFSVPFESIILTFISG*

>peptide 8 (76 aa)
MQAEKHQNRLPAVEVQMCFLYLSYLLVNPDRECNNRGVALALLQQAKPTGWECQAFLSRSTSQVNRLQIPSNHCHI*

>peptide 9 (30 aa)
MTARTAPTDASSKGNFPPDAWQNNSLVTVL*

>peptide 10 (31 aa)
MSARKFPQKMIIGDMLKNFRGELSCILQRFR*

Sequence

>CNT0019995
TACCAACTGGAAGTTGTGGTTTCTTCAGGTCCTCCTCAGTCAAGAGACTGTCTTCATCAATCAGATCAGAGTCGTCGTCAATTTGAATCTTGGGAAGGGC
TTTTGTTGTTTTCTTAAGGGGAAAAGAAGAGCCCATGCTCCAGCTAGCCTTCTTTGCCTTAACCTACAAGTGGTTCAAATTAGCACAAAAACTAAAGCCT
GCACAGCAAAACTAACATACTATAACACATGATCTTAGACCACTCACTGTAACAGATTGCACGCTATCCTGCGAGCTTGCAGCAGAAGATTGCACTTCAG
CAAATCCACCCATCAGTAACTTGCGCTCAATATCAGTGTTCGGCTAACGGAGACAATCATAAAAAAATTAAGAACTTTAAATCGACATTGCAAGAGAAAC
GAGACAACAAAGACAGATTCTGATAAGTTAATACCTTCTGACTGGATGAGGGTGCAGGGCTCTGCACCAATACTCTTCCACCAGCTTTCAGCACCCGCCT
GATTTCAGCAACCAATTGCTCCCTCAAGCTTTCCACGTTTTTAATGACTGCAAGAACCGCACCAACTGATGCATCTTCAAAAGGCAACTTCCCACCTGAT
GCATGGCAGAACAATAGTTTGGTCACGGTTTTGTGATAACACACACACACACACACACACACACACACACACACACACACACACACACACGGCATAGCAC
TAGCAAAGCATAACACAAATTAAAAATCGAACATTATTGTTTAATAGAGGCTCCCAAAATCAGGAATGCTAGCACTTGGCTTATTCATAAACACACACAT
CCATAATCAGGAAGCATACATTACTGAACCATTAAATTTAATAATAAAAATTCAGATGTTGAATCCATGGCTGAAATTTTCTGTTCCTTTTGAAAGTATA
ATCCTAACTTTCATCTCCGGCTGACCTGGTAATATCTTCTAGCTCCTTTTACCTTATATTTTTTTCAGTTGCTTGAGAAATAGCGGTAGGAAAATTGACA
CATGTCATTCGTAAATCCATGGGACTTAGAGCAACTCCAAGAGCTTCCTAAGAAATTGTTCCCCAAAACATCATATAGGGGGCTGCTGAAAAAAATCCAC
TAAGAGCAACTCCAAATGAGTGCTAGAAAATTTCCCCAAAAAATGATTATTGGGGATATGTTAAAAAATTTTAGGGGTGAATTATCATGTATACTCCAAC
GATTCCGTTAAACAAATGCGACTCAATCTCAGCCACAGTCTGAGTCTTACAGACACACACAAAACCTAACATGCCGGTGGCAGCCACATTATCACACACC
GGAACAAATAACTTTGAGGCAAAAACACATTATGCAAGCAGAGAAACACCAGAACAGACTCCCAGCTGTTGAAGTGCAAATGTGTTTTCTATATTTGAGT
TACTTGCTGGTAAATCCCGATCGGGAATGTAATAATCGGGGAGTTGCATTAGCACTTTTGCAGCAAGCTAAGCCAACTGGTTGGGAATGTCAAGCATTCT
TGAGCAGGAGTACTAGTCAAGTTAACAGGCTTCAGATCCCATCCAATCATTGTCACATTTGAATATAACTTGAGCGGGTAGAAAAAATATCATAACAAAG
GCATCATGGACTGAATCCTAAACATCATAACGAAGGCATCATGGACTGAATAGCGATCATCATAACAACGGCAGGAAACAGACTCCCAACTGAATCATGG
TTAACATGGACTGAATTGTGGTGGCACTGCATGCAGTGCGAGATGCATCATATCCAGGTCAATTCAGGTTAGCAAATGCAAGGCCACAGGAGTTGCCGCC
AGGGAGGAGGCTCTAGGCGAGGTCACGGGAGTTGCGGTGGAAGTTGCTGCGGATTGGGGAAGACCTTTGCTCGCCAATATTTGAGGGAGAGTGGAGCTCG
GATGCGGGACGCTGATAATTTGGGGGAAGGAAAGGGGAACTATTGGGTGGAGAATTTTTTGTTTTTCACCCCAAAACATGTTTTTGGGTTGGTTTTAGCG
TTCTTCTGGAGATGCTCTTAAGCAACTAGCACATGAGACATGGCATAGATATCAAGAACTGCAAGGAGAGGTTCAAG

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GRMZM2G068059_T01 protein coding CNT0019995 1698 639 CDS Trans
GRMZM2G068059_T03 protein coding CNT0019995 1698 639 CDS Trans
GRMZM2G407347_T01 Anamorsin homolog protein coding CNT0019995 2398 845 CDS Cis
GRMZM2G407347_T02 Anamorsin homolog protein coding CNT0019995 2398 845 CDS Cis
GRMZM2G407347_T04 Anamorsin homolog protein coding CNT0019995 2398 845 CDS Cis