Detailed information on CNT0020527


BLAST search results

BLAST vs PNRD
Zea mays: GRMZM2G048187_T01, E-value = 1e-115

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0005926, E-value = 3e-21 (V. vinifera)
CNT0042553, E-value = 3e-18 (A. thaliana)
CNT0035158, E-value = 9e-12 (P. patens)
CNT0000126, E-value = 3e-21 (G. max)
CNT0022384, E-value = 1e-17 (A. trichopoda)
CNT0025626, E-value = 3e-21 (O. sativa)
CNT0010786, E-value = 4e-11 (S. tuberosum)

Expression of CNT0020527

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MWMPACRRANRFSQKHMVVIRNAEVIIWDLASGGQRRCR*

>peptide 2 (65 aa)
VLLSVNACQCSNLSRDVDACMPTSQPILPKAYGGDKERRGDHLGPGQRWPTEMQMNVMSDKHHPV*

>peptide 3 (76 aa)
MDACILYVSIWTAALPWVTTFIAVAAILSREVVLLANFAAVKWRAVFTIVWKAEWWPQPGDDAACQKNVAPPVIYI*

>peptide 4 (49 aa)
MIWSHHHHTLTLVQEEPNKNKKVRYQKQRPPGSGWMDRKLKAALLWPVR*

>peptide 5 (37 aa)
MACSIHDRMESRMVAATWGRRRLPKKRCSTRYIYIVD*

Sequence

>CNT0020527
GTGCTTCTTAGCGTGAACGCCTGTCAGTGCTCTAACCTTAGCCGAGATGTGGATGCCTGCATGCCGACGAGCCAACCGATTCTCCCAAAAGCATATGGTG
GTGATAAGGAACGCCGAGGTGATCATCTGGGACCTGGCCAGCGGTGGCCAACGGAGATGCAGATGAACGTTATGAGCGACAAGCACCACCCAGTCTGAGT
CTCACATGATTTGGTCTCACCACCACCACACACTAACGCTGGTCCAAGAGGAGCCAAATAAAAATAAAAAGGTGAGGTATCAAAAGCAGCGTCCACCGGG
CAGTGGATGGATGGATAGAAAACTAAAGGCTGCTTTGCTTTGGCCTGTGAGGTGAGGTTAGCAAGCACACGGTGAGCTGATGATAACACTTGTCCTGCCG
TGGGTCTCAGTGGAGGTACGGTATCTTGGTGATCGGCCTCGACCCTGACACCAAGCATTTTCTTAAGCTTGCCTGAGGTAGCAGCACGGATGGATGCATG
CATTTTGTACGTTTCAATATGGACAGCAGCACTTCCATGGGTCACCACGTTTATCGCAGTAGCCGCCATTCTTAGCAGGGAAGTTGTACTCTTGGCAAAC
TTTGCCGCAGTGAAATGGCGTGCAGTATTCACGATCGTATGGAAAGCAGAATGGTGGCCGCAACCTGGGGACGACGCCGCCTGCCAAAAAAACGTTGCTC
CACCCGTTATATATATATAGTTGATTAGTACATACATATATATATATATATATATATATATATATATATATATATATATATATATA

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GRMZM5G843972_T01 Uncharacterized protein protein coding CNT0020527 874 311 CDS_UTR Cis