Detailed information on CNT0020809


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P11369|LORF2_MOUSE, E-value = 3e-12

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0004997, E-value = 5e-12 (V. vinifera)
CNT0042619, E-value = 8e-11 (A. thaliana)
CNT0034528, E-value = 2e-11 (P. patens)
CNT0023067, E-value = 7e-08 (A. trichopoda)
CNT0031679, E-value = 4e-25 (O. sativa)
CNT0008225, E-value = 3e-07 (S. tuberosum)

Expression of CNT0020809

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MACRSAWGKISCHFVVAKNLAILDIVRSSCCQ*

>peptide 2 (38 aa)
IQFLHFWEKPRALSTSNRYAQLMESKAFDMSSLTKRVG*

>peptide 3 (32 aa)
MGEDIMPLRSRQESGHPRHRTVILLPMSMSHG*

>peptide 4 (63 aa)
MMVGLMQFVFLTGEQPVITNQRSDENFPSSIICHQMNFFCVCISQTHPDKSGMLSSSCLLDCH*

>peptide 5 (49 aa)
MNAFWAVETISFILGASLFAKILVNIFMKLLMRLIGLNMSILSAPSLFL*

>peptide 6 (32 aa)
MLLVVYLRSVLGIILLPHGSFLLSCVYPLLLH*

>peptide 7 (43 aa)
MQPKNGIGRTNTRCPSLLNHLIEPINFCPKNFKSKPPIETKGR*

Sequence

>CNT0020809
GATCCAATTTCTCCATTTCTGGGAAAAACCTAGAGCTCTCAGTACCTCTAACAGATATGCCCAGTTGATGGAATCGAAAGCTTTTGATATGTCAAGTTTG
ACAAAAAGGGTTGGCTGATTGTTCCTATGAAGTTTCTGAATAACTTTTTGGACATAGAGAAAATTATCATGAATTGAACGTTTTTGAATGAACGCGTTTT
GGGCAGTGGAGACAATCTCATTCATTCTTGGCGCAAGTCTGTTTGCTAAAATCTTGGTCAATATTTTTATGAAGCTATTGATGAGACTGATCGGCCTAAA
CATGTCAATCCTGTCAGCACCCTCCCTTTTTTTGTAAAAGCGCGATATTTGCCTCATTAACGAGGTTTAGGTTTTTGCATCTATGGTGATAGAAATCATG
AATTGCACTTGATAGATCATCCTTAATCAGCTCAAAACAACTCTTATAGAAGATCCCTATAAAACCATCTCGACCCGGCGCCTTTTCAGAGTGCATCCCT
ATAACCACATTTTTAATCTCATCCTCGTTGAACAAGAAATCCAGATCTGATAAGTCAAATGGACTATAGCCTAGGTTACCCCACCGAACGGCCCTCTGTC
TCTCACCCCTTCTACCAATAGCTTCAGTGAAATGATGGTGGGCCTCATGCAGTTTGTCTTCCTGACTGGTGAGCAACCTGTCATCACGAACCAGCGATCT
GATGAAAATTTTCCTTCTTCTATTATTTGCCATCAGATGAATTTTTTTTGTGTTTGCATCTCTCAGACGCATCCAGACAAGTCTGGAATGTTGTCTAGCT
CTTGCCTTTTGGACTGTCACTAGCCCAAGGATTTTCATTTTTAGACTTCTTCTGAACTCTAGCTCGTCCCCGGAAAGTTGCCTGGATTCCTGTGCTTTCT
CAAGAAGAGTAAGGACGGTCTGAATGATTGCTAATTGATCTTTAAAATTGCCTACTGTCTTTCGTCTCCAGATCAATAGAGCTTTAGCCGTGCGGATCAT
CTTCACATGCAGCCTAAGAATGGCATCGGAAGAACGAACACTAGATGTCCAAGCTTGCTGAACCACCTCATTGAACCCATCAATTTTTGTCCAAAAAACT
TCAAATCTAAACCCCCTATAGAAACTAAAGGTAGATAAACCTTGCATAAGTAAGGGACAATGATCTGAGGTCACGGACCCAATGGCCTGCAGATCAGCAT
GGGGGAAGATATCATGCCACTTCGTAGTCGCCAAGAATCTGGCCATCCTAGACATCGTACGGTCATCCTGTTGCCAATGAGCATGTCGCATGGTTGACTT
AATGCCCAGTCTTCACTCATATATTCTTCTTCTTCTTCTTTGTGACCTGTATCTTCCGATTAAACAAAGATAGGAATTAGTCAGACTACAAATATATGGA
ACCACAAAAAATGTACATATAGGTCTTTGGCATGCTTCTAGTTGTTTACCTGAGGTCTGTTCTTGGAATAATCCTGCTTCCTCACGGCTCGTTCCTACTG
AGCTGTGTTTACCCGCTCCTACTTCACTAGTACATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTCCTTCTTCTTCTTCTTC
TTCTTTGTGACTTGTATCT

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GRMZM2G013170_T01 Uncharacterized protein protein coding CNT0020809 836 303 CDS Cis