Detailed information on CNT0021710


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9ZPX1|ARF5_ARATH, E-value = 2e-110

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0005350, E-value = 4e-09 (V. vinifera)
CNT0043554, E-value = 1e-11 (A. thaliana)
CNT0030093, E-value = 2e-07 (O. sativa)
CNT0009174, E-value = 5e-30 (S. tuberosum)

Expression of CNT0021710

ERR364329: 25.547 RPKM

Peptides detected in this lncRNA

>peptide 1 (186 aa)
MGLLSIIRKVKRKEKEMRILMVGLDNSGKTTIVMRINGEDTSSISPTLGFNIKTIEYDRYVLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDFRRLD
DCRLELHNLLKEERLSGASLLILANKQDIHGALELKDIAKVLNLDAMDESRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIYVLDC*

>peptide 2 (33 aa)
QTLGKFYREEPRQNTDSLLSLALKFLPPSYLLC*

>peptide 3 (36 aa)
MVRTRVVLVLLWGLISRPLNMTGMCSIFGMLVGKKQ*

>peptide 4 (32 aa)
MFSTVDINAAEHYKFISRQDLLMSCAQWHWCI*

>peptide 5 (62 aa)
MPCMPGRGEKKEDVCPSTRKISTLNLLLNLLEVLIHVAKHKSHFELDQCFVAVYMLLSLDTM*

Sequence

>CNT0021710
CCAAACTCTAGGAAAGTTTTATCGAGAAGAACCCCGACAAAACACTGACTCTCTTCTCTCGCTCGCGTTGAAGTTCCTTCCTCCCAGCTACCTTCTTTGT
TGAAGGAGAGTGAGACTACAAATCCAAGAGGGCACGATTAAGATATGGGGCTTCTCAGCATCATTCGTAAAGTGAAGAGGAAGGAGAAAGAAATGCGGAT
TCTTATGGTGGGGCTTGACAATTCTGGAAAGACTACGATTGTCATGCGAATAAATGGTGAGGACACGAGTAGTATTAGTCCTACTTTGGGGTTTAATATC
AAGACCATTGAATATGACAGGTATGTGCTCAATATTTGGGATGTTGGTGGGCAAAAAACAATAAGATCTTATTGGAGAAACTACTTTGAACAAACAGATG
GCTTGGTATGGGTTGTTGATAGTTCGGATTTTCGACGATTAGATGATTGCAGATTGGAGCTTCACAATCTCTTAAAAGAAGAGAGGTTATCAGGAGCATC
TTTACTAATATTGGCTAACAAACAAGACATCCATGGGGCCCTTGAACTGAAAGATATTGCTAAGGTTTTGAACCTGGATGCCATGGATGAAAGCAGGCAT
TGGAAGATTGTAGGTTGCAGTGCTTATACTGGTGAAGGATTGCTTGAAGGATTCGATTGGCTGGTTCAAGACATCGCTAGTCGAATATATGTTCTCGACT
GTTGATATTAATGCTGCTGAACATTACAAGTTCATTTCACGACAAGATCTTTTAATGTCTTGTGCTCAGTGGCATTGGTGTATTTGATATCGAGTGAAGG
GAATAGAGAAATAGGGATGCCGTGTATGCCTGGAAGAGGTGAAAAGAAGGAAGATGTTTGTCCTTCAACCAGGAAAATCTCGACTCTCAATTTGCTGCTT
AATTTACTGGAAGTCTTAATCCATGTAGCAAAGCACAAGAGTCATTTTGAACTTGATCAGTGTTTTGTTGCGGTTTACATGCTTTTATCACTTGACACAA
TGTGATACAGTGGATGCACCTTCGGAAGGGCTTCTCTTACATCTAGACCCAATTACCTTTTTATCCCTGTGTTTTACCATGATTTCTACTGTTAGTTCAA
TCCCTCTCTCTCTCTCTCTCACACACACACACACACACAACCCTATATTGTTCAGTTAAGCTTTGTATTTATATTTCATGAGGGCGCTTGGATGGTTCTA
AACCATGTTTAATTCTTACAGAAGAAACTGGAATGATATCTCG