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Detailed information on CNT0021733


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|F1SRI0|TPPC2_PIG, E-value = 2e-37

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0002066, E-value = 4e-17 (G. max)

Expression of CNT0021733

ERR364329: 56.419 RPKM

Peptides detected in this lncRNA

>peptide 1 (135 aa)
MASTACFVIVSRNDIPIYEAEVGSALKKEEAAHQHQFILHAALDIVQDLAWTTSAMFLKAMDRFSDLVVSVYVTAGHTRLMLLHDSRNEDGIKSFFQEVH
ELYIKILLNPLYLPGSRITSSHFDTKVRALARKFL*

>peptide 2 (50 aa)
MFSIFMMHTIPFQFEVSASAYATGTSKFFYCNPNLLNLSCSFTYLNVHYY*

>peptide 3 (45 aa)
MTFLYTKLKWALRLKKKRQLINTNLYCMRHWILFKTLHGQQVLCS*

Sequence

>CNT0021733
CTATCTTTTGAGGTTTATTATTAAGCTCTCTCGTCTCTCTAGATCAGATAAGAGTATTTGACATTTCTTCATTCCATTCTCAAAGTCTCTTTTTGGCATT
TTCATGAGACATTTGTGAAGAGTGTCATGGCAAGCACAGCATGTTTTGTCATTGTTAGCAGGAATGACATTCCTATATACGAAGCTGAAGTGGGCTCTGC
GCTTAAAAAAGAAGAGGCAGCTCATCAACACCAATTTATATTGCATGCGGCATTGGATATTGTTCAAGACCTTGCATGGACAACAAGTGCTATGTTCTTG
AAGGCAATGGATAGATTTAGTGATCTGGTGGTGTCAGTTTATGTTACTGCTGGTCATACTAGATTGATGCTTCTTCATGACTCCCGCAATGAGGATGGCA
TAAAGAGCTTTTTCCAAGAGGTTCATGAGCTTTATATAAAGATTCTCCTAAACCCACTGTACTTGCCGGGATCACGGATAACTTCCTCTCACTTCGATAC
CAAAGTTCGGGCACTTGCGAGGAAATTTCTCTAGAATCTCCCTTCTCTTTCTTTCCCTCTCCTTTGCCTTACGGTTGATTTTTCTGTGTGGTTTCGCCAT
TGAGAGCAAAGATTTACCTCACCTGTAATTGCTCCATGTTTTCTATTTTTATGATGCACACCATTCCATTTCAGTTTGAGGTTTCTGCTAGCGCCTATGC
TACAGGTACTTCAAAATTTTTTTATTGCAATCCAAATCTATTAAATTTGTCATGTTCATTTACTTATCTAAATGTACACTATTACTAAGAGCATACTTAA
ATGTGTTAATTCC